Functional clusters

Information

  • Type Gene Ontology
  • Description macromolecule metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 3 CH_aag_83 22 34 0.0000113909
Arabidopsis thaliana Chr3 3 CH_ath_311 30 58 0.00000713375
Magnolia biondii Chr16 3 CH_mbi_540 30 66 0.000240268
Magnolia biondii Chr05 3 CH_mbi_688 30 69 0.000856865
Secale cereale GWHASIY00000002 3 CH_sce_770 20 27 0.000729156
Sequoiadendron giganteum chr5 3 CH_sgi_1161 29 55 0.000160602
Anthoceros agrestis Sc2ySwM_228 4 CH_aag_83 22 34 0.0000113909
Arabidopsis thaliana Chr3 4 CH_ath_311 30 58 0.00000713375
Magnolia biondii Chr16 4 CH_mbi_540 30 66 0.000240268
Magnolia biondii Chr05 4 CH_mbi_688 30 69 0.000856865
Secale cereale GWHASIY00000002 4 CH_sce_770 20 27 0.000729156
Sequoiadendron giganteum chr5 4 CH_sgi_1161 29 55 0.000160602

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 4
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 20
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000154 rRNA modification 12
GO:0000183 rDNA heterochromatin assembly 2
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
GO:0000209 protein polyubiquitination 8
GO:0000244 spliceosomal tri-snRNP complex assembly 14
GO:0000245 spliceosomal complex assembly 28
GO:0000270 peptidoglycan metabolic process 2
GO:0000272 polysaccharide catabolic process 4
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0000292 RNA fragment catabolic process 2
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000372 Group I intron splicing 8
GO:0000373 Group II intron splicing 4
GO:0000374 Group III intron splicing 2
GO:0000380 alternative mRNA splicing, via spliceosome 4
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000398 mRNA splicing, via spliceosome 12
GO:0000413 protein peptidyl-prolyl isomerization 26
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 12
GO:0000469 cleavage involved in rRNA processing 2
GO:0000476 maturation of 4.5S rRNA 2
GO:0000495 box H/ACA RNA 3'-end processing 2
GO:0000706 meiotic DNA double-strand break processing 2
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000723 telomere maintenance 8
GO:0000730 DNA recombinase assembly 2
GO:0000737 DNA catabolic process, endonucleolytic 20
GO:0000738 DNA catabolic process, exonucleolytic 6
GO:0000963 mitochondrial RNA processing 8
GO:0000964 mitochondrial RNA 5'-end processing 4
GO:0000966 RNA 5'-end processing 2
GO:0001172 transcription, RNA-templated 10
GO:0001188 RNA polymerase I preinitiation complex assembly 10
GO:0001731 formation of translation preinitiation complex 2
GO:0001881 receptor recycling 6
GO:0002084 protein depalmitoylation 6
GO:0002100 tRNA wobble adenosine to inosine editing 2
GO:0002182 cytoplasmic translational elongation 6
GO:0002940 tRNA N2-guanine methylation 2
GO:0002943 tRNA dihydrouridine synthesis 6
GO:0002949 tRNA threonylcarbamoyladenosine modification 4
GO:0005983 starch catabolic process 2
GO:0006024 glycosaminoglycan biosynthetic process 2
GO:0006032 chitin catabolic process 106
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 26
GO:0006259 DNA metabolic process 6
GO:0006260 DNA replication 12
GO:0006261 DNA-dependent DNA replication 12
GO:0006264 mitochondrial DNA replication 6
GO:0006265 DNA topological change 2
GO:0006268 DNA unwinding involved in DNA replication 2
GO:0006269 DNA replication, synthesis of RNA primer 10
GO:0006273 lagging strand elongation 4
GO:0006275 regulation of DNA replication 2
GO:0006279 premeiotic DNA replication 2
GO:0006281 DNA repair 4
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006284 base-excision repair 2
GO:0006289 nucleotide-excision repair 2
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion 2
GO:0006308 DNA catabolic process 30
GO:0006310 DNA recombination 4
GO:0006312 mitotic recombination 6
GO:0006315 homing of group II introns 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006351 transcription, DNA-templated 2
GO:0006352 DNA-templated transcription, initiation 12
GO:0006353 DNA-templated transcription, termination 44
GO:0006354 DNA-templated transcription, elongation 4
GO:0006355 regulation of transcription, DNA-templated 18
GO:0006357 regulation of transcription by RNA polymerase II 34
GO:0006360 transcription by RNA polymerase I 8
GO:0006364 rRNA processing 8
GO:0006367 transcription initiation from RNA polymerase II promoter 4
GO:0006369 termination of RNA polymerase II transcription 12
GO:0006370 7-methylguanosine mRNA capping 2
GO:0006376 mRNA splice site selection 8
GO:0006379 mRNA cleavage 2
GO:0006383 transcription by RNA polymerase III 2
GO:0006384 transcription initiation from RNA polymerase III promoter 4
GO:0006400 tRNA modification 4
GO:0006406 mRNA export from nucleus 2
GO:0006412 translation 8
GO:0006413 translational initiation 2
GO:0006415 translational termination 12
GO:0006417 regulation of translation 4
GO:0006418 tRNA aminoacylation for protein translation 6
GO:0006419 alanyl-tRNA aminoacylation 10
GO:0006420 arginyl-tRNA aminoacylation 4
GO:0006422 aspartyl-tRNA aminoacylation 32
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006426 glycyl-tRNA aminoacylation 26
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 2
GO:0006429 leucyl-tRNA aminoacylation 20
GO:0006430 lysyl-tRNA aminoacylation 10
GO:0006431 methionyl-tRNA aminoacylation 8
GO:0006432 phenylalanyl-tRNA aminoacylation 4
GO:0006433 prolyl-tRNA aminoacylation 12
GO:0006434 seryl-tRNA aminoacylation 30
GO:0006435 threonyl-tRNA aminoacylation 10
GO:0006436 tryptophanyl-tRNA aminoacylation 8
GO:0006438 valyl-tRNA aminoacylation 28
GO:0006464 cellular protein modification process 36
GO:0006465 signal peptide processing 4
GO:0006468 protein phosphorylation 302
GO:0006470 protein dephosphorylation 12
GO:0006480 N-terminal protein amino acid methylation 8
GO:0006486 protein glycosylation 112
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 2
GO:0006493 protein O-linked glycosylation 4
GO:0006499 N-terminal protein myristoylation 2
GO:0006506 GPI anchor biosynthetic process 4
GO:0006508 proteolysis 12
GO:0006511 ubiquitin-dependent protein catabolic process 114
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 2
GO:0006516 glycoprotein catabolic process 4
GO:0006624 vacuolar protein processing 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 2
GO:0007004 telomere maintenance via telomerase 2
GO:0007131 reciprocal meiotic recombination 4
GO:0008033 tRNA processing 2
GO:0008213 protein alkylation 2
GO:0008380 RNA splicing 2
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 10
GO:0009057 macromolecule catabolic process 2
GO:0009059 macromolecule biosynthetic process 4
GO:0009100 glycoprotein metabolic process 2
GO:0009101 glycoprotein biosynthetic process 2
GO:0009249 protein lipoylation 2
GO:0009250 glucan biosynthetic process 8
GO:0009251 glucan catabolic process 4
GO:0009299 mRNA transcription 2
GO:0009451 RNA modification 6
GO:0009452 7-methylguanosine RNA capping 4
GO:0009969 xyloglucan biosynthetic process 60
GO:0010143 cutin biosynthetic process 2
GO:0010206 photosystem II repair 2
GO:0010213 non-photoreactive DNA repair 2
GO:0010239 chloroplast mRNA processing 6
GO:0010246 rhamnogalacturonan I biosynthetic process 4
GO:0010306 rhamnogalacturonan II biosynthetic process 2
GO:0010383 cell wall polysaccharide metabolic process 2
GO:0010390 histone monoubiquitination 10
GO:0010393 galacturonan metabolic process 4
GO:0010398 xylogalacturonan metabolic process 10
GO:0010406 classical arabinogalactan protein metabolic process 2
GO:0010409 extensin metabolic process 4
GO:0010410 hemicellulose metabolic process 2
GO:0010411 xyloglucan metabolic process 10
GO:0010413 glucuronoxylan metabolic process 8
GO:0010425 DNA methylation on cytosine within a CNG sequence 4
GO:0010466 negative regulation of peptidase activity 10
GO:0010467 gene expression 4
GO:0010468 regulation of gene expression 8
GO:0010493 Lewis a epitope biosynthetic process 2
GO:0010495 long-distance posttranscriptional gene silencing 2
GO:0010501 RNA secondary structure unwinding 12
GO:0010556 regulation of macromolecule biosynthetic process 2
GO:0010569 regulation of double-strand break repair via homologous recombination 30
GO:0010581 regulation of starch biosynthetic process 4
GO:0010586 miRNA metabolic process 2
GO:0010587 miRNA catabolic process 2
GO:0010599 production of lsiRNA involved in RNA interference 6
GO:0010604 positive regulation of macromolecule metabolic process 2
GO:0010605 negative regulation of macromolecule metabolic process 2
GO:0010608 posttranscriptional regulation of gene expression 6
GO:0010629 negative regulation of gene expression 18
GO:0010731 protein glutathionylation 60
GO:0010951 negative regulation of endopeptidase activity 6
GO:0015074 DNA integration 38
GO:0015680 protein maturation by copper ion transfer 4
GO:0016070 RNA metabolic process 6
GO:0016075 rRNA catabolic process 6
GO:0016180 snRNA processing 6
GO:0016233 telomere capping 2
GO:0016255 attachment of GPI anchor to protein 4
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0016485 protein processing 6
GO:0016540 protein autoprocessing 40
GO:0016554 cytidine to uridine editing 4
GO:0016567 protein ubiquitination 354
GO:0016575 histone deacetylation 4
GO:0016579 protein deubiquitination 6
GO:0016973 poly(A)+ mRNA export from nucleus 2
GO:0017003 protein-heme linkage 4
GO:0017009 protein-phycocyanobilin linkage 8
GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase 10
GO:0017196 N-terminal peptidyl-methionine acetylation 6
GO:0018108 peptidyl-tyrosine phosphorylation 4
GO:0018117 protein adenylylation 6
GO:0018142 protein-DNA covalent cross-linking 6
GO:0018171 peptidyl-cysteine oxidation 2
GO:0018193 peptidyl-amino acid modification 4
GO:0018205 peptidyl-lysine modification 2
GO:0018209 peptidyl-serine modification 2
GO:0018215 protein phosphopantetheinylation 4
GO:0018230 peptidyl-L-cysteine S-palmitoylation 2
GO:0018279 protein N-linked glycosylation via asparagine 8
GO:0018298 protein-chromophore linkage 4
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline 8
GO:0019252 starch biosynthetic process 2
GO:0019538 protein metabolic process 6
GO:0019941 modification-dependent protein catabolic process 2
GO:0019988 charged-tRNA amino acid modification 2
GO:0030162 regulation of proteolysis 2
GO:0030174 regulation of DNA-dependent DNA replication initiation 2
GO:0030244 cellulose biosynthetic process 2
GO:0030245 cellulose catabolic process 10
GO:0030327 prenylated protein catabolic process 4
GO:0030422 production of siRNA involved in RNA interference 22
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030488 tRNA methylation 2
GO:0030592 DNA ADP-ribosylation 16
GO:0031047 gene silencing by RNA 4
GO:0031054 pre-miRNA processing 4
GO:0031063 regulation of histone deacetylation 4
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 4
GO:0031119 tRNA pseudouridine synthesis 2
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 2
GO:0031222 arabinan catabolic process 2
GO:0031297 replication fork processing 10
GO:0031365 N-terminal protein amino acid modification 4
GO:0031440 regulation of mRNA 3'-end processing 2
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0032147 activation of protein kinase activity 4
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032268 regulation of cellular protein metabolic process 4
GO:0032324 molybdopterin cofactor biosynthetic process 2
GO:0032446 protein modification by small protein conjugation 4
GO:0032774 RNA biosynthetic process 2
GO:0032784 regulation of DNA-templated transcription, elongation 12
GO:0032875 regulation of DNA endoreduplication 4
GO:0032877 positive regulation of DNA endoreduplication 10
GO:0032881 regulation of polysaccharide metabolic process 2
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0033120 positive regulation of RNA splicing 2
GO:0033169 histone H3-K9 demethylation 4
GO:0033234 negative regulation of protein sumoylation 2
GO:0033259 plastid DNA replication 2
GO:0033567 DNA replication, Okazaki fragment processing 6
GO:0033683 nucleotide-excision repair, DNA incision 8
GO:0034227 tRNA thio-modification 4
GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic 6
GO:0034470 ncRNA processing 2
GO:0034472 snRNA 3'-end processing 4
GO:0034477 U6 snRNA 3'-end processing 4
GO:0034587 piRNA metabolic process 2
GO:0034645 cellular macromolecule biosynthetic process 10
GO:0034660 ncRNA metabolic process 4
GO:0034970 histone H3-R2 methylation 2
GO:0035195 gene silencing by miRNA 2
GO:0035278 miRNA mediated inhibition of translation 60
GO:0035279 mRNA cleavage involved in gene silencing by miRNA 2
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0035552 oxidative single-stranded DNA demethylation 2
GO:0035606 peptidyl-cysteine S-trans-nitrosylation 6
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0035825 homologous recombination 4
GO:0036066 protein O-linked fucosylation 6
GO:0036123 histone H3-K9 dimethylation 4
GO:0036211 protein modification process 6
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0036290 protein trans-autophosphorylation 2
GO:0036297 interstrand cross-link repair 28
GO:0040029 regulation of gene expression, epigenetic 2
GO:0042138 meiotic DNA double-strand break formation 6
GO:0042177 negative regulation of protein catabolic process 22
GO:0042276 error-prone translesion synthesis 8
GO:0042794 plastid rRNA transcription 2
GO:0042868 antisense RNA metabolic process 2
GO:0043137 DNA replication, removal of RNA primer 2
GO:0043144 sno(s)RNA processing 2
GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 4
GO:0043407 negative regulation of MAP kinase activity 4
GO:0043412 macromolecule modification 10
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043488 regulation of mRNA stability 2
GO:0043543 protein acylation 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0043632 modification-dependent macromolecule catabolic process 18
GO:0043666 regulation of phosphoprotein phosphatase activity 2
GO:0043686 co-translational protein modification 2
GO:0043967 histone H4 acetylation 10
GO:0043968 histone H2A acetylation 2
GO:0043970 histone H3-K9 acetylation 2
GO:0043971 histone H3-K18 acetylation 6
GO:0043972 histone H3-K23 acetylation 2
GO:0043981 histone H4-K5 acetylation 4
GO:0043985 histone H4-R3 methylation 2
GO:0044030 regulation of DNA methylation 2
GO:0044257 cellular protein catabolic process 2
GO:0044260 cellular macromolecule metabolic process 14
GO:0044264 cellular polysaccharide metabolic process 2
GO:0044265 cellular macromolecule catabolic process 6
GO:0044267 cellular protein metabolic process 18
GO:0044648 histone H3-K4 dimethylation 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045128 negative regulation of reciprocal meiotic recombination 2
GO:0045292 mRNA cis splicing, via spliceosome 10
GO:0045489 pectin biosynthetic process 8
GO:0045490 pectin catabolic process 6
GO:0045492 xylan biosynthetic process 4
GO:0045493 xylan catabolic process 42
GO:0045727 positive regulation of translation 6
GO:0045732 positive regulation of protein catabolic process 2
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity 2
GO:0045739 positive regulation of DNA repair 2
GO:0045814 negative regulation of gene expression, epigenetic 2
GO:0045815 positive regulation of gene expression, epigenetic 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 8
GO:0045901 positive regulation of translational elongation 2
GO:0045910 negative regulation of DNA recombination 24
GO:0045944 positive regulation of transcription by RNA polymerase II 14
GO:0045951 positive regulation of mitotic recombination 2
GO:0046777 protein autophosphorylation 14
GO:0048255 mRNA stabilization 2
GO:0048358 mucilage pectin biosynthetic process 2
GO:0048363 mucilage pectin metabolic process 2
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0051070 galactomannan biosynthetic process 26
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051103 DNA ligation involved in DNA repair 14
GO:0051123 RNA polymerase II preinitiation complex assembly 4
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 18
GO:0051571 positive regulation of histone H3-K4 methylation 4
GO:0051573 negative regulation of histone H3-K9 methylation 6
GO:0051973 positive regulation of telomerase activity 18
GO:0052324 plant-type cell wall cellulose biosynthetic process 2
GO:0060148 positive regulation of posttranscriptional gene silencing 2
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0060966 regulation of gene silencing by RNA 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0062052 starch granule initiation 2
GO:0070150 mitochondrial glycyl-tRNA aminoacylation 2
GO:0070262 peptidyl-serine dephosphorylation 10
GO:0070476 rRNA (guanine-N7)-methylation 2
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 4
GO:0070534 protein K63-linked ubiquitination 8
GO:0070592 cell wall polysaccharide biosynthetic process 2
GO:0070646 protein modification by small protein removal 4
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 2
GO:0070897 transcription preinitiation complex assembly 12
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070932 histone H3 deacetylation 2
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 16
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071076 RNA 3' uridylation 26
GO:0071139 resolution of recombination intermediates 2
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 10
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 8
GO:0071712 ER-associated misfolded protein catabolic process 4
GO:0071932 replication fork reversal 2
GO:0072344 rescue of stalled ribosome 16
GO:0072355 histone H3-T3 phosphorylation 4
GO:0080009 mRNA methylation 4
GO:0080058 protein deglutathionylation 4
GO:0080156 mitochondrial mRNA modification 4
GO:0080163 regulation of protein serine/threonine phosphatase activity 4
GO:0080182 histone H3-K4 trimethylation 4
GO:0080188 gene silencing by RNA-directed DNA methylation 12
GO:0090042 tubulin deacetylation 4
GO:0090065 regulation of production of siRNA involved in RNA interference 2
GO:0090116 C-5 methylation of cytosine 2
GO:0090153 regulation of sphingolipid biosynthetic process 4
GO:0090304 nucleic acid metabolic process 6
GO:0090305 nucleic acid phosphodiester bond hydrolysis 2
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic 4
GO:0090617 mitochondrial mRNA 5'-end processing 8
GO:0097167 circadian regulation of translation 2
GO:0097222 mitochondrial mRNA polyadenylation 2
GO:0097264 self proteolysis 2
GO:0097428 protein maturation by iron-sulfur cluster transfer 8
GO:0097510 base-excision repair, AP site formation via deaminated base removal 2
GO:0097659 nucleic acid-templated transcription 2
GO:0098532 histone H3-K27 trimethylation 20
GO:0098734 macromolecule depalmitoylation 2
GO:0098789 pre-mRNA cleavage required for polyadenylation 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity 2
GO:0140040 mitochondrial polycistronic RNA processing 2
GO:0140053 mitochondrial gene expression 2
GO:1900030 regulation of pectin biosynthetic process 4
GO:1900109 regulation of histone H3-K9 dimethylation 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900364 negative regulation of mRNA polyadenylation 8
GO:1900368 regulation of RNA interference 2
GO:1900369 negative regulation of RNA interference 4
GO:1900370 positive regulation of RNA interference 2
GO:1900864 mitochondrial RNA modification 2
GO:1900871 chloroplast mRNA modification 6
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901535 regulation of DNA demethylation 2
GO:1901799 negative regulation of proteasomal protein catabolic process 6
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1901957 regulation of cutin biosynthetic process 28
GO:1901959 positive regulation of cutin biosynthetic process 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1902066 regulation of cell wall pectin metabolic process 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902916 positive regulation of protein polyubiquitination 2
GO:1902979 mitotic DNA replication termination 4
GO:1903311 regulation of mRNA metabolic process 4
GO:1904292 regulation of ERAD pathway 4
GO:1904294 positive regulation of ERAD pathway 8
GO:1904380 endoplasmic reticulum mannose trimming 6
GO:1904667 negative regulation of ubiquitin protein ligase activity 2
GO:1904668 positive regulation of ubiquitin protein ligase activity 14
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 8
GO:1990426 mitotic recombination-dependent replication fork processing 2
GO:1990619 histone H3-K9 deacetylation 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 14
GO:2000117 negative regulation of cysteine-type endopeptidase activity 16
GO:2000143 negative regulation of DNA-templated transcription, initiation 2
GO:2000232 regulation of rRNA processing 4
GO:2000234 positive regulation of rRNA processing 6
GO:2000541 positive regulation of protein geranylgeranylation 4
GO:2000653 regulation of genetic imprinting 2
GO:2000904 regulation of starch metabolic process 4
GO:2001007 negative regulation of cellulose biosynthetic process 4
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 2
GO:2001253 regulation of histone H3-K36 trimethylation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001