Functional clusters

Information

  • Type Gene Ontology
  • Description cellular macromolecule biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr8 3 CH_asa_847 9 12 0.000893478
Lolium perenne Lp_chr4_0 3 CH_lpe_434 17 54 0.000809487
Musa acuminata chr10 3 CH_mac_267 24 53 0.000684186
Magnolia biondii Chr04 3 CH_mbi_651 17 51 0.000508904
Sequoiadendron giganteum chr3 3 CH_sgi_1170 22 79 0.000186452
Allium sativum chr8 4 CH_asa_847 9 12 0.000893478
Lolium perenne Lp_chr4_0 4 CH_lpe_434 17 54 0.000809487
Musa acuminata chr10 4 CH_mac_267 24 53 0.000684186
Magnolia biondii Chr04 4 CH_mbi_651 17 51 0.000508904
Sequoiadendron giganteum chr3 4 CH_sgi_1170 22 79 0.000186452

Available child term results

Ontology identifier Description Number of clusters
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000183 rDNA heterochromatin assembly 2
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0001188 RNA polymerase I preinitiation complex assembly 10
GO:0001731 formation of translation preinitiation complex 2
GO:0002182 cytoplasmic translational elongation 6
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 26
GO:0006260 DNA replication 12
GO:0006261 DNA-dependent DNA replication 12
GO:0006264 mitochondrial DNA replication 6
GO:0006268 DNA unwinding involved in DNA replication 2
GO:0006269 DNA replication, synthesis of RNA primer 10
GO:0006273 lagging strand elongation 4
GO:0006275 regulation of DNA replication 2
GO:0006279 premeiotic DNA replication 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006351 transcription, DNA-templated 2
GO:0006352 DNA-templated transcription, initiation 12
GO:0006353 DNA-templated transcription, termination 44
GO:0006354 DNA-templated transcription, elongation 4
GO:0006355 regulation of transcription, DNA-templated 18
GO:0006357 regulation of transcription by RNA polymerase II 34
GO:0006360 transcription by RNA polymerase I 8
GO:0006367 transcription initiation from RNA polymerase II promoter 4
GO:0006369 termination of RNA polymerase II transcription 12
GO:0006383 transcription by RNA polymerase III 2
GO:0006384 transcription initiation from RNA polymerase III promoter 4
GO:0006412 translation 8
GO:0006413 translational initiation 2
GO:0006415 translational termination 12
GO:0006417 regulation of translation 4
GO:0006418 tRNA aminoacylation for protein translation 6
GO:0006419 alanyl-tRNA aminoacylation 10
GO:0006420 arginyl-tRNA aminoacylation 4
GO:0006422 aspartyl-tRNA aminoacylation 32
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006426 glycyl-tRNA aminoacylation 26
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 2
GO:0006429 leucyl-tRNA aminoacylation 20
GO:0006430 lysyl-tRNA aminoacylation 10
GO:0006431 methionyl-tRNA aminoacylation 8
GO:0006432 phenylalanyl-tRNA aminoacylation 4
GO:0006433 prolyl-tRNA aminoacylation 12
GO:0006434 seryl-tRNA aminoacylation 30
GO:0006435 threonyl-tRNA aminoacylation 10
GO:0006436 tryptophanyl-tRNA aminoacylation 8
GO:0006438 valyl-tRNA aminoacylation 28
GO:0006486 protein glycosylation 112
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 2
GO:0006493 protein O-linked glycosylation 4
GO:0006499 N-terminal protein myristoylation 2
GO:0006506 GPI anchor biosynthetic process 4
GO:0007004 telomere maintenance via telomerase 2
GO:0009101 glycoprotein biosynthetic process 2
GO:0009250 glucan biosynthetic process 8
GO:0009299 mRNA transcription 2
GO:0009969 xyloglucan biosynthetic process 60
GO:0010306 rhamnogalacturonan II biosynthetic process 2
GO:0010493 Lewis a epitope biosynthetic process 2
GO:0010581 regulation of starch biosynthetic process 4
GO:0016255 attachment of GPI anchor to protein 4
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0018230 peptidyl-L-cysteine S-palmitoylation 2
GO:0018279 protein N-linked glycosylation via asparagine 8
GO:0019252 starch biosynthetic process 2
GO:0030174 regulation of DNA-dependent DNA replication initiation 2
GO:0030244 cellulose biosynthetic process 2
GO:0031297 replication fork processing 10
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032784 regulation of DNA-templated transcription, elongation 12
GO:0032875 regulation of DNA endoreduplication 4
GO:0032877 positive regulation of DNA endoreduplication 10
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0033259 plastid DNA replication 2
GO:0033567 DNA replication, Okazaki fragment processing 6
GO:0035278 miRNA mediated inhibition of translation 60
GO:0036066 protein O-linked fucosylation 6
GO:0042276 error-prone translesion synthesis 8
GO:0042794 plastid rRNA transcription 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045492 xylan biosynthetic process 4
GO:0045727 positive regulation of translation 6
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 8
GO:0045901 positive regulation of translational elongation 2
GO:0045944 positive regulation of transcription by RNA polymerase II 14
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051123 RNA polymerase II preinitiation complex assembly 4
GO:0051973 positive regulation of telomerase activity 18
GO:0052324 plant-type cell wall cellulose biosynthetic process 2
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0062052 starch granule initiation 2
GO:0070150 mitochondrial glycyl-tRNA aminoacylation 2
GO:0070592 cell wall polysaccharide biosynthetic process 2
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 2
GO:0070897 transcription preinitiation complex assembly 12
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0071932 replication fork reversal 2
GO:0072344 rescue of stalled ribosome 16
GO:0097167 circadian regulation of translation 2
GO:1900030 regulation of pectin biosynthetic process 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1902979 mitotic DNA replication termination 4
GO:1990426 mitotic recombination-dependent replication fork processing 2
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 14
GO:2000143 negative regulation of DNA-templated transcription, initiation 2
GO:2000541 positive regulation of protein geranylgeranylation 4
GO:2001007 negative regulation of cellulose biosynthetic process 4
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001