Functional clusters

Information

  • Type Gene Ontology
  • Description cellular macromolecule catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza sativa ssp. indica Chr1 3 CH_osaindica_233 10 66 0.0000315957
Sequoiadendron giganteum chr1 3 CH_sgi_867 6 11 0.0000121098
Vanilla planifolia CM028157.1 3 CH_vpl_108 12 65 0.00000167457
Oryza sativa ssp. indica Chr1 4 CH_osaindica_233 10 66 0.0000315957
Sequoiadendron giganteum chr1 4 CH_sgi_867 6 11 0.0000121098
Vanilla planifolia CM028157.1 4 CH_vpl_108 12 65 0.00000167457

Available child term results

Ontology identifier Description Number of clusters
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0000292 RNA fragment catabolic process 2
GO:0000737 DNA catabolic process, endonucleolytic 20
GO:0000738 DNA catabolic process, exonucleolytic 6
GO:0006308 DNA catabolic process 30
GO:0006511 ubiquitin-dependent protein catabolic process 114
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 2
GO:0006516 glycoprotein catabolic process 4
GO:0010587 miRNA catabolic process 2
GO:0016075 rRNA catabolic process 6
GO:0019941 modification-dependent protein catabolic process 2
GO:0030327 prenylated protein catabolic process 4
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 4
GO:0031145 anaphase-promoting complex-dependent catabolic process 2
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 2
GO:0043137 DNA replication, removal of RNA primer 2
GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 2
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 4
GO:0043488 regulation of mRNA stability 2
GO:0043632 modification-dependent macromolecule catabolic process 18
GO:0044257 cellular protein catabolic process 2
GO:0045493 xylan catabolic process 42
GO:0048255 mRNA stabilization 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 4
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 16
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway 10
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 8
GO:0071712 ER-associated misfolded protein catabolic process 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901799 negative regulation of proteasomal protein catabolic process 6
GO:1904292 regulation of ERAD pathway 4
GO:1904294 positive regulation of ERAD pathway 8
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001