Functional clusters

Information

  • Type Gene Ontology
  • Description macromolecule modification

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 3 CH_aag_179 15 39 0.000734681
Miscanthus sinensis Chr04 3 CH_msi_291 11 15 0.0000126226
Sequoiadendron giganteum chr11 3 CH_sgi_1286 14 36 0.000530795
Saccharum spontaneum Chr2B 3 CH_ssp_483 11 14 0.000014357
Triticum dicoccoides 7B 3 CH_tdi_378 9 10 0.0000389819
Anthoceros agrestis Sc2ySwM_340 4 CH_aag_179 15 39 0.000734681
Miscanthus sinensis Chr04 4 CH_msi_291 11 15 0.0000126226
Sequoiadendron giganteum chr11 4 CH_sgi_1286 14 36 0.000530795
Saccharum spontaneum Chr2B 4 CH_ssp_483 11 14 0.000014357
Triticum dicoccoides 7B 4 CH_tdi_378 9 10 0.0000389819

Available child term results

Ontology identifier Description Number of clusters
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 20
GO:0000154 rRNA modification 12
GO:0000209 protein polyubiquitination 8
GO:0000413 protein peptidyl-prolyl isomerization 26
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0002084 protein depalmitoylation 6
GO:0002100 tRNA wobble adenosine to inosine editing 2
GO:0002940 tRNA N2-guanine methylation 2
GO:0002943 tRNA dihydrouridine synthesis 6
GO:0002949 tRNA threonylcarbamoyladenosine modification 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006400 tRNA modification 4
GO:0006464 cellular protein modification process 36
GO:0006468 protein phosphorylation 302
GO:0006470 protein dephosphorylation 12
GO:0006480 N-terminal protein amino acid methylation 8
GO:0006486 protein glycosylation 112
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 2
GO:0006493 protein O-linked glycosylation 4
GO:0006499 N-terminal protein myristoylation 2
GO:0006506 GPI anchor biosynthetic process 4
GO:0008213 protein alkylation 2
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 10
GO:0009249 protein lipoylation 2
GO:0009451 RNA modification 6
GO:0010390 histone monoubiquitination 10
GO:0010425 DNA methylation on cytosine within a CNG sequence 4
GO:0010731 protein glutathionylation 60
GO:0016255 attachment of GPI anchor to protein 4
GO:0016554 cytidine to uridine editing 4
GO:0016567 protein ubiquitination 354
GO:0016575 histone deacetylation 4
GO:0016579 protein deubiquitination 6
GO:0017003 protein-heme linkage 4
GO:0017009 protein-phycocyanobilin linkage 8
GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase 10
GO:0017196 N-terminal peptidyl-methionine acetylation 6
GO:0018108 peptidyl-tyrosine phosphorylation 4
GO:0018117 protein adenylylation 6
GO:0018142 protein-DNA covalent cross-linking 6
GO:0018171 peptidyl-cysteine oxidation 2
GO:0018193 peptidyl-amino acid modification 4
GO:0018205 peptidyl-lysine modification 2
GO:0018209 peptidyl-serine modification 2
GO:0018215 protein phosphopantetheinylation 4
GO:0018230 peptidyl-L-cysteine S-palmitoylation 2
GO:0018279 protein N-linked glycosylation via asparagine 8
GO:0018298 protein-chromophore linkage 4
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline 8
GO:0019988 charged-tRNA amino acid modification 2
GO:0030488 tRNA methylation 2
GO:0030592 DNA ADP-ribosylation 16
GO:0031063 regulation of histone deacetylation 4
GO:0031119 tRNA pseudouridine synthesis 2
GO:0031365 N-terminal protein amino acid modification 4
GO:0032147 activation of protein kinase activity 4
GO:0032446 protein modification by small protein conjugation 4
GO:0033169 histone H3-K9 demethylation 4
GO:0033234 negative regulation of protein sumoylation 2
GO:0034227 tRNA thio-modification 4
GO:0034970 histone H3-R2 methylation 2
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0035552 oxidative single-stranded DNA demethylation 2
GO:0035606 peptidyl-cysteine S-trans-nitrosylation 6
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0036066 protein O-linked fucosylation 6
GO:0036123 histone H3-K9 dimethylation 4
GO:0036211 protein modification process 6
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0036290 protein trans-autophosphorylation 2
GO:0043407 negative regulation of MAP kinase activity 4
GO:0043543 protein acylation 2
GO:0043666 regulation of phosphoprotein phosphatase activity 2
GO:0043686 co-translational protein modification 2
GO:0043967 histone H4 acetylation 10
GO:0043968 histone H2A acetylation 2
GO:0043970 histone H3-K9 acetylation 2
GO:0043971 histone H3-K18 acetylation 6
GO:0043972 histone H3-K23 acetylation 2
GO:0043981 histone H4-K5 acetylation 4
GO:0043985 histone H4-R3 methylation 2
GO:0044030 regulation of DNA methylation 2
GO:0044648 histone H3-K4 dimethylation 2
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity 2
GO:0046777 protein autophosphorylation 14
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0051571 positive regulation of histone H3-K4 methylation 4
GO:0051573 negative regulation of histone H3-K9 methylation 6
GO:0070262 peptidyl-serine dephosphorylation 10
GO:0070476 rRNA (guanine-N7)-methylation 2
GO:0070534 protein K63-linked ubiquitination 8
GO:0070646 protein modification by small protein removal 4
GO:0070932 histone H3 deacetylation 2
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0072355 histone H3-T3 phosphorylation 4
GO:0080009 mRNA methylation 4
GO:0080058 protein deglutathionylation 4
GO:0080156 mitochondrial mRNA modification 4
GO:0080163 regulation of protein serine/threonine phosphatase activity 4
GO:0080182 histone H3-K4 trimethylation 4
GO:0090042 tubulin deacetylation 4
GO:0090116 C-5 methylation of cytosine 2
GO:0098532 histone H3-K27 trimethylation 20
GO:0098734 macromolecule depalmitoylation 2
GO:0101030 tRNA-guanine transglycosylation 2
GO:0106005 RNA 5'-cap (guanine-N7)-methylation 2
GO:1900109 regulation of histone H3-K9 dimethylation 2
GO:1900864 mitochondrial RNA modification 2
GO:1900871 chloroplast mRNA modification 6
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901535 regulation of DNA demethylation 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902916 positive regulation of protein polyubiquitination 2
GO:1904380 endoplasmic reticulum mannose trimming 6
GO:1904667 negative regulation of ubiquitin protein ligase activity 2
GO:1904668 positive regulation of ubiquitin protein ligase activity 14
GO:1990619 histone H3-K9 deacetylation 2
GO:2000541 positive regulation of protein geranylgeranylation 4
GO:2001253 regulation of histone H3-K36 trimethylation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001