Functional clusters

Information

  • Type Gene Ontology
  • Description negative regulation of cellular macromolecule biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00030 3 CH_atr_280 5 11 0.000336585
Calamus simplicifolius scaffold454 3 CH_calsi_332 4 5 0.00085158
Ceratophyllum demersum 4 3 CH_cde_122 6 12 0.0000952803
Digitaria exilis Dexi_CM05836_chr03A 3 CH_dex_615 5 11 0.000470944
Elaeis guineensis EG5.1_Chr9 3 CH_egu_278 6 16 0.000779563
Phyllostachys edulis hic_scaffold_2 3 CH_ped_377 5 8 0.000218334
Saccharum spontaneum Chr7C 3 CH_ssp_662 7 23 0.000109944
Amborella trichopoda AmTr_v1.0_scaffold00030 4 CH_atr_280 5 11 0.000336585
Calamus simplicifolius scaffold454 4 CH_calsi_332 4 5 0.00085158
Ceratophyllum demersum 4 4 CH_cde_122 6 12 0.0000952803
Digitaria exilis Dexi_CM05836_chr03A 4 CH_dex_615 5 11 0.000470944
Elaeis guineensis EG5.1_Chr9 4 CH_egu_278 6 16 0.000779563
Phyllostachys edulis hic_scaffold_2 4 CH_ped_377 5 8 0.000218334
Saccharum spontaneum Chr7C 4 CH_ssp_662 7 23 0.000109944

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000183 rDNA heterochromatin assembly 2
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0035278 miRNA mediated inhibition of translation 60
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:2000143 negative regulation of DNA-templated transcription, initiation 2
GO:2001007 negative regulation of cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001