Functional clusters

Information

  • Type Gene Ontology
  • Description negative regulation of gene expression

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cenchrus purpureus GWHAORA00000008 3 CH_cpu_243 7 9 0.0000000109333
Phyllostachys edulis hic_scaffold_13 3 CH_ped_406 4 4 0.000301393
Panicum hallii Chr06 3 CH_pha_288 4 4 0.000116472
Sorghum bicolor Chr07 3 CH_sbi_173 6 9 0.000000764766
Secale cereale GWHASIY00000001 3 CH_sce_615 7 31 0.000265585
Setaria italica scaffold_6 3 CH_sit_63 8 8 0.000000000000646041
Saccharum spontaneum Chr6D 3 CH_ssp_845 4 4 0.000333019
Saccharum spontaneum Chr6C 3 CH_ssp_846 4 4 0.000333019
Setaria viridis Chr_06 3 CH_svi_53 9 11 0.00000000000011561
Cenchrus purpureus GWHAORA00000008 4 CH_cpu_243 7 9 0.0000000109333
Phyllostachys edulis hic_scaffold_13 4 CH_ped_406 4 4 0.000301393
Panicum hallii Chr06 4 CH_pha_288 4 4 0.000116472
Sorghum bicolor Chr07 4 CH_sbi_173 6 9 0.000000764766
Secale cereale GWHASIY00000001 4 CH_sce_615 7 31 0.000265585
Setaria italica scaffold_6 4 CH_sit_63 8 8 0.000000000000646041
Saccharum spontaneum Chr6D 4 CH_ssp_845 4 4 0.000333019
Saccharum spontaneum Chr6C 4 CH_ssp_846 4 4 0.000333019
Setaria viridis Chr_06 4 CH_svi_53 9 11 0.00000000000011561

Available child term results

Ontology identifier Description Number of clusters
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0006342 chromatin silencing 4
GO:0006348 chromatin silencing at telomere 2
GO:0010495 long-distance posttranscriptional gene silencing 2
GO:0010599 production of lsiRNA involved in RNA interference 6
GO:0030422 production of siRNA involved in RNA interference 22
GO:0031047 gene silencing by RNA 4
GO:0031054 pre-miRNA processing 4
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 4
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0035195 gene silencing by miRNA 2
GO:0035278 miRNA mediated inhibition of translation 60
GO:0035279 mRNA cleavage involved in gene silencing by miRNA 2
GO:0043488 regulation of mRNA stability 2
GO:0045814 negative regulation of gene expression, epigenetic 2
GO:0048255 mRNA stabilization 2
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 18
GO:0060148 positive regulation of posttranscriptional gene silencing 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060966 regulation of gene silencing by RNA 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 16
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0080188 gene silencing by RNA-directed DNA methylation 12
GO:0090065 regulation of production of siRNA involved in RNA interference 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900368 regulation of RNA interference 2
GO:1900369 negative regulation of RNA interference 4
GO:1900370 positive regulation of RNA interference 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001