Functional clusters

Information

  • Type Gene Ontology
  • Description response to chemical

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr4 3 CH_ath_305 21 79 0.0000136608
Arabidopsis thaliana Chr3 3 CH_ath_400 11 21 0.0000730024
Carya illinoinensis Chr11 3 CH_cil_528 12 18 0.000986544
Magnolia biondii Chr14 3 CH_mbi_292 15 28 0.0000020825
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_676 15 22 0.000000352369
Solanum tuberosum ST4.03ch10 3 CH_stu_483 25 80 0.000165744
Arabidopsis thaliana Chr4 4 CH_ath_305 21 79 0.0000136608
Arabidopsis thaliana Chr3 4 CH_ath_400 11 21 0.0000730024
Carya illinoinensis Chr11 4 CH_cil_528 12 18 0.000986544
Magnolia biondii Chr14 4 CH_mbi_292 15 28 0.0000020825
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_676 15 22 0.000000352369
Solanum tuberosum ST4.03ch10 4 CH_stu_483 25 80 0.000165744

Available child term results

Ontology identifier Description Number of clusters
GO:0000302 response to reactive oxygen species 4
GO:0000303 response to superoxide 16
GO:0000304 response to singlet oxygen 18
GO:0002237 response to molecule of bacterial origin 2
GO:0002238 response to molecule of fungal origin 14
GO:0002240 response to molecule of oomycetes origin 4
GO:0005513 detection of calcium ion 6
GO:0006805 xenobiotic metabolic process 4
GO:0006982 response to lipid hydroperoxide 2
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0009269 response to desiccation 26
GO:0009270 response to humidity 2
GO:0009407 toxin catabolic process 88
GO:0009410 response to xenobiotic stimulus 2
GO:0009413 response to flooding 2
GO:0009414 response to water deprivation 8
GO:0009415 response to water 10
GO:0009593 detection of chemical stimulus 4
GO:0009594 detection of nutrient 2
GO:0009635 response to herbicide 40
GO:0009636 response to toxic substance 4
GO:0009723 response to ethylene 12
GO:0009725 response to hormone 12
GO:0009733 response to auxin 420
GO:0009734 auxin-activated signaling pathway 74
GO:0009735 response to cytokinin 42
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009737 response to abscisic acid 10
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009739 response to gibberellin 12
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009741 response to brassinosteroid 14
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009749 response to glucose 2
GO:0009750 response to fructose 4
GO:0009751 response to salicylic acid 18
GO:0009753 response to jasmonic acid 6
GO:0009755 hormone-mediated signaling pathway 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009819 drought recovery 18
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010033 response to organic substance 6
GO:0010035 response to inorganic substance 6
GO:0010037 response to carbon dioxide 6
GO:0010038 response to metal ion 8
GO:0010039 response to iron ion 10
GO:0010042 response to manganese ion 8
GO:0010043 response to zinc ion 4
GO:0010044 response to aluminum ion 16
GO:0010045 response to nickel cation 20
GO:0010046 response to mycotoxin 18
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010167 response to nitrate 10
GO:0010183 pollen tube guidance 40
GO:0010193 response to ozone 2
GO:0010200 response to chitin 28
GO:0010226 response to lithium ion 32
GO:0010266 response to vitamin B1 40
GO:0010273 detoxification of copper ion 6
GO:0010299 detoxification of cobalt ion 4
GO:0010315 auxin efflux 16
GO:0010353 response to trehalose 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0010555 response to mannitol 10
GO:0010583 response to cyclopentenone 2
GO:0014070 response to organic cyclic compound 4
GO:0019430 removal of superoxide radicals 2
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031000 response to caffeine 18
GO:0031001 response to brefeldin A 4
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0032025 response to cobalt ion 6
GO:0032491 detection of molecule of fungal origin 32
GO:0032497 detection of lipopolysaccharide 2
GO:0032870 cellular response to hormone stimulus 2
GO:0033194 response to hydroperoxide 2
GO:0033198 response to ATP 2
GO:0033273 response to vitamin 4
GO:0033274 response to vitamin B2 30
GO:0033591 response to L-ascorbic acid 2
GO:0034097 response to cytokine 2
GO:0034599 cellular response to oxidative stress 22
GO:0034614 cellular response to reactive oxygen species 6
GO:0034620 cellular response to unfolded protein 20
GO:0035865 cellular response to potassium ion 2
GO:0035967 cellular response to topologically incorrect protein 2
GO:0042178 xenobiotic catabolic process 10
GO:0042542 response to hydrogen peroxide 6
GO:0042631 cellular response to water deprivation 14
GO:0043201 response to leucine 12
GO:0043434 response to peptide hormone 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045471 response to ethanol 50
GO:0046677 response to antibiotic 4
GO:0046685 response to arsenic-containing substance 18
GO:0046686 response to cadmium ion 20
GO:0046688 response to copper ion 30
GO:0046898 response to cycloheximide 2
GO:0051592 response to calcium ion 2
GO:0051776 detection of redox state 2
GO:0051958 methotrexate transport 2
GO:0060416 response to growth hormone 14
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0070542 response to fatty acid 2
GO:0070887 cellular response to chemical stimulus 8
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071219 cellular response to molecule of bacterial origin 6
GO:0071226 cellular response to molecule of fungal origin 4
GO:0071230 cellular response to amino acid stimulus 6
GO:0071242 cellular response to ammonium ion 4
GO:0071249 cellular response to nitrate 10
GO:0071275 cellular response to aluminum ion 2
GO:0071277 cellular response to calcium ion 10
GO:0071280 cellular response to copper ion 8
GO:0071284 cellular response to lead ion 8
GO:0071287 cellular response to manganese ion 26
GO:0071289 cellular response to nickel ion 20
GO:0071291 cellular response to selenium ion 8
GO:0071294 cellular response to zinc ion 8
GO:0071323 cellular response to chitin 12
GO:0071327 cellular response to trehalose stimulus 22
GO:0071332 cellular response to fructose stimulus 2
GO:0071333 cellular response to glucose stimulus 8
GO:0071345 cellular response to cytokine stimulus 2
GO:0071360 cellular response to exogenous dsRNA 8
GO:0071367 cellular response to brassinosteroid stimulus 4
GO:0071369 cellular response to ethylene stimulus 8
GO:0071370 cellular response to gibberellin stimulus 6
GO:0071395 cellular response to jasmonic acid stimulus 4
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 30
GO:0071452 cellular response to singlet oxygen 2
GO:0071454 cellular response to anoxia 4
GO:0071456 cellular response to hypoxia 48
GO:0071457 cellular response to ozone 2
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 6
GO:0071585 detoxification of cadmium ion 2
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0071722 detoxification of arsenic-containing substance 10
GO:0071731 response to nitric oxide 6
GO:0072708 response to sorbitol 16
GO:0072722 response to amitrole 16
GO:0072756 cellular response to paraquat 8
GO:0080021 response to benzoic acid 14
GO:0080026 response to indolebutyric acid 2
GO:0080033 response to nitrite 2
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080094 response to trehalose-6-phosphate 4
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0080184 response to phenylpropanoid 54
GO:0090547 response to low humidity 2
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:0098754 detoxification 22
GO:0098755 maintenance of seed dormancy by absisic acid 6
GO:0098869 cellular oxidant detoxification 16
GO:0106167 extracellular ATP signaling 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1901652 response to peptide 2
GO:1901698 response to nitrogen compound 2
GO:1901699 cellular response to nitrogen compound 4
GO:1901700 response to oxygen-containing compound 8
GO:1901701 cellular response to oxygen-containing compound 4
GO:1902065 response to L-glutamate 4
GO:1902074 response to salt 8
GO:1902347 response to strigolactone 2
GO:1902348 cellular response to strigolactone 6
GO:1902584 positive regulation of response to water deprivation 2
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1903842 response to arsenite ion 2
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1904383 response to sodium phosphate 78
GO:1904975 response to bleomycin 4
GO:1905582 response to mannose 8
GO:1990532 stress response to nickel ion 4
GO:1990748 cellular detoxification 2
GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane 328
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001