Functional clusters
Information
- Type Gene Ontology
- Description cellular response to salicylic acid stimulus
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr10 | 3 | CH_camsi_234 | 4 | 8 | 0.0000000618924 |
| Coffea canephora | chr9 | 3 | CH_ccan_20 | 5 | 41 | 0.00000000000323281 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_152 | 3 | 3 | 0.0000017642 |
| Durio zibethinus | NW_019168026.1 | 3 | CH_dzi_29 | 6 | 11 | 0.0000000000000177895 |
| Eutrema salsugineum | scaffold_4 | 3 | CH_esa_96 | 3 | 3 | 0.00000143526 |
| Glycine max | Gm06 | 3 | CH_gma_224 | 4 | 22 | 0.00000284496 |
| Lotus japonicus | chr2 | 3 | CH_lja_179 | 3 | 5 | 0.0000126497 |
| Malus domestica | Chr03 | 3 | CH_mdo_389 | 3 | 7 | 0.0000343252 |
| Oryza sativa ssp. japonica | chr11 | 3 | CH_osa_89 | 4 | 5 | 0.000000000729068 |
| Phaseolus vulgaris | Chr05 | 3 | CH_pvu_73 | 5 | 12 | 0.000000000222386 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_518 | 3 | 11 | 0.0000471543 |
| Simmondsia chinensis | GWHAASQ00000011 | 3 | CH_sci_54 | 4 | 8 | 0.0000000925582 |
| Sechium edule | LG08 | 3 | CH_sed_56 | 4 | 4 | 0.000000000539272 |
| Tripterygium wilfordii | NC_052237.1 | 3 | CH_twi_105 | 4 | 9 | 0.0000000894725 |
| Vitis vinifera | chr13 | 3 | CH_vvi_71 | 5 | 6 | 0.00000000000301529 |
| Camellia sinensis var. sinensis | Chr10 | 4 | CH_camsi_234 | 4 | 8 | 0.0000000618924 |
| Coffea canephora | chr9 | 4 | CH_ccan_20 | 5 | 41 | 0.00000000000323281 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_152 | 3 | 3 | 0.0000017642 |
| Durio zibethinus | NW_019168026.1 | 4 | CH_dzi_29 | 6 | 11 | 0.0000000000000177895 |
| Eutrema salsugineum | scaffold_4 | 4 | CH_esa_96 | 3 | 3 | 0.00000143526 |
| Glycine max | Gm06 | 4 | CH_gma_224 | 4 | 22 | 0.00000284496 |
| Lotus japonicus | chr2 | 4 | CH_lja_179 | 3 | 5 | 0.0000126497 |
| Malus domestica | Chr03 | 4 | CH_mdo_389 | 3 | 7 | 0.0000343252 |
| Oryza sativa ssp. japonica | chr11 | 4 | CH_osa_89 | 4 | 5 | 0.000000000729068 |
| Phaseolus vulgaris | Chr05 | 4 | CH_pvu_73 | 5 | 12 | 0.000000000222386 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_518 | 3 | 11 | 0.0000471543 |
| Simmondsia chinensis | GWHAASQ00000011 | 4 | CH_sci_54 | 4 | 8 | 0.0000000925582 |
| Sechium edule | LG08 | 4 | CH_sed_56 | 4 | 4 | 0.000000000539272 |
| Tripterygium wilfordii | NC_052237.1 | 4 | CH_twi_105 | 4 | 9 | 0.0000000894725 |
| Vitis vinifera | chr13 | 4 | CH_vvi_71 | 5 | 6 | 0.00000000000301529 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009862 | systemic acquired resistance, salicylic acid mediated signaling pathway | 12 |
| GO:0009863 | salicylic acid mediated signaling pathway | 4 |
| GO:0080151 | positive regulation of salicylic acid mediated signaling pathway | 2 |
| GO:2000031 | regulation of salicylic acid mediated signaling pathway | 16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |