Functional clusters

Information

  • Type Gene Ontology
  • Description response to hormone

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 3 CH_amhyb_127 9 14 0.000142092
Magnolia biondii Chr07 3 CH_mbi_649 6 7 0.000788818
Quercus lobata 12 3 CH_qlo_773 18 67 0.0000958253
Quercus lobata 10 3 CH_qlo_920 11 25 0.000363722
Rhododendron simsii chr01 3 CH_rsi_372 11 23 0.0000886621
Sequoiadendron giganteum HRSCAF_1 3 CH_sgi_736 13 25 0.00000147211
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 4 CH_amhyb_127 9 14 0.000142092
Magnolia biondii Chr07 4 CH_mbi_649 6 7 0.000788818
Quercus lobata 12 4 CH_qlo_773 18 67 0.0000958253
Quercus lobata 10 4 CH_qlo_920 11 25 0.000363722
Rhododendron simsii chr01 4 CH_rsi_372 11 23 0.0000886621
Sequoiadendron giganteum HRSCAF_1 4 CH_sgi_736 13 25 0.00000147211

Available child term results

Ontology identifier Description Number of clusters
GO:0009723 response to ethylene 12
GO:0009733 response to auxin 420
GO:0009734 auxin-activated signaling pathway 74
GO:0009735 response to cytokinin 42
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009737 response to abscisic acid 10
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009739 response to gibberellin 12
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009741 response to brassinosteroid 14
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009753 response to jasmonic acid 6
GO:0009755 hormone-mediated signaling pathway 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010315 auxin efflux 16
GO:0032870 cellular response to hormone stimulus 2
GO:0043434 response to peptide hormone 2
GO:0060416 response to growth hormone 14
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071367 cellular response to brassinosteroid stimulus 4
GO:0071369 cellular response to ethylene stimulus 8
GO:0071370 cellular response to gibberellin stimulus 6
GO:0071395 cellular response to jasmonic acid stimulus 4
GO:0080026 response to indolebutyric acid 2
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0098755 maintenance of seed dormancy by absisic acid 6
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001