Functional clusters

Information

  • Type Gene Ontology
  • Description cellular response to chemical stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Fragaria x ananassa Fvb7-1 3 CH_fan_444 8 17 0.000308688
Solanum pennellii Spenn-ch01 3 CH_spe_224 11 34 0.0000118789
Trifolium pratense Tp57577_TGAC_v2_LG7 3 CH_tpr_312 8 16 0.000400381
Vigna mungo CM024072.1 3 CH_vmu_322 8 17 0.000881369
Fragaria x ananassa Fvb7-1 4 CH_fan_444 8 17 0.000308688
Solanum pennellii Spenn-ch01 4 CH_spe_224 11 34 0.0000118789
Trifolium pratense Tp57577_TGAC_v2_LG7 4 CH_tpr_312 8 16 0.000400381
Vigna mungo CM024072.1 4 CH_vmu_322 8 17 0.000881369

Available child term results

Ontology identifier Description Number of clusters
GO:0006805 xenobiotic metabolic process 4
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0009734 auxin-activated signaling pathway 74
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009755 hormone-mediated signaling pathway 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010315 auxin efflux 16
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0019430 removal of superoxide radicals 2
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0032870 cellular response to hormone stimulus 2
GO:0034599 cellular response to oxidative stress 22
GO:0034614 cellular response to reactive oxygen species 6
GO:0034620 cellular response to unfolded protein 20
GO:0035865 cellular response to potassium ion 2
GO:0035967 cellular response to topologically incorrect protein 2
GO:0042178 xenobiotic catabolic process 10
GO:0042631 cellular response to water deprivation 14
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071230 cellular response to amino acid stimulus 6
GO:0071242 cellular response to ammonium ion 4
GO:0071249 cellular response to nitrate 10
GO:0071275 cellular response to aluminum ion 2
GO:0071277 cellular response to calcium ion 10
GO:0071280 cellular response to copper ion 8
GO:0071284 cellular response to lead ion 8
GO:0071287 cellular response to manganese ion 26
GO:0071289 cellular response to nickel ion 20
GO:0071291 cellular response to selenium ion 8
GO:0071294 cellular response to zinc ion 8
GO:0071323 cellular response to chitin 12
GO:0071327 cellular response to trehalose stimulus 22
GO:0071332 cellular response to fructose stimulus 2
GO:0071333 cellular response to glucose stimulus 8
GO:0071345 cellular response to cytokine stimulus 2
GO:0071360 cellular response to exogenous dsRNA 8
GO:0071367 cellular response to brassinosteroid stimulus 4
GO:0071369 cellular response to ethylene stimulus 8
GO:0071370 cellular response to gibberellin stimulus 6
GO:0071395 cellular response to jasmonic acid stimulus 4
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 30
GO:0071452 cellular response to singlet oxygen 2
GO:0071454 cellular response to anoxia 4
GO:0071456 cellular response to hypoxia 48
GO:0071457 cellular response to ozone 2
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 6
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0072756 cellular response to paraquat 8
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:0098869 cellular oxidant detoxification 16
GO:0106167 extracellular ATP signaling 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1901699 cellular response to nitrogen compound 4
GO:1901701 cellular response to oxygen-containing compound 4
GO:1902348 cellular response to strigolactone 6
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1990748 cellular detoxification 2
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001