Functional clusters
Information
- Type Gene Ontology
- Description response to lithium ion
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 3 | CH_amhyb_30 | 4 | 5 | 0.00000000112713 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 3 | CH_bvu_30 | 5 | 6 | 0.000000000000532814 |
| Camellia sinensis var. sinensis | Chr2 | 3 | CH_camsi_834 | 2 | 3 | 0.000825341 |
| Cannabis sativa | NC_044376.1 | 3 | CH_cansat_197 | 3 | 12 | 0.0000497439 |
| Capsicum annuum | PGAv.1.6.scaffold1094 | 3 | CH_can_463 | 2 | 2 | 0.000826105 |
| Corchorus olitorius | AWUE01014114.1 | 3 | CH_col_117 | 2 | 2 | 0.000876296 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1703 | 3 | CH_cqu_93 | 4 | 4 | 0.000000000435641 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1762 | 3 | CH_cqu_94 | 4 | 4 | 0.000000000435641 |
| Daucus carota | DCARv2_Chr3 | 3 | CH_dca_125 | 3 | 3 | 0.000000213555 |
| Durio zibethinus | NW_019167938.1 | 3 | CH_dzi_132 | 3 | 4 | 0.00000108259 |
| Gossypium hirsutum | A11 | 3 | CH_ghi_269 | 3 | 3 | 0.000000727242 |
| Gossypium hirsutum | D11 | 3 | CH_ghi_270 | 3 | 3 | 0.000000727242 |
| Gossypium raimondii | Chr07 | 3 | CH_gra_138 | 3 | 3 | 0.000000517353 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_69 | 11 | 33 | 9.50138e-26 |
| Solanum lycopersicum | SL4.0ch09 | 3 | CH_sly_582 | 2 | 2 | 0.000880411 |
| Vitis vinifera | chr4 | 3 | CH_vvi_347 | 3 | 22 | 0.000266677 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 4 | CH_amhyb_30 | 4 | 5 | 0.00000000112713 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 4 | CH_bvu_30 | 5 | 6 | 0.000000000000532814 |
| Camellia sinensis var. sinensis | Chr2 | 4 | CH_camsi_834 | 2 | 3 | 0.000825341 |
| Cannabis sativa | NC_044376.1 | 4 | CH_cansat_197 | 3 | 12 | 0.0000497439 |
| Capsicum annuum | PGAv.1.6.scaffold1094 | 4 | CH_can_463 | 2 | 2 | 0.000826105 |
| Corchorus olitorius | AWUE01014114.1 | 4 | CH_col_117 | 2 | 2 | 0.000876296 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1703 | 4 | CH_cqu_93 | 4 | 4 | 0.000000000435641 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1762 | 4 | CH_cqu_94 | 4 | 4 | 0.000000000435641 |
| Daucus carota | DCARv2_Chr3 | 4 | CH_dca_125 | 3 | 3 | 0.000000213555 |
| Durio zibethinus | NW_019167938.1 | 4 | CH_dzi_132 | 3 | 4 | 0.00000108259 |
| Gossypium hirsutum | A11 | 4 | CH_ghi_269 | 3 | 3 | 0.000000727242 |
| Gossypium hirsutum | D11 | 4 | CH_ghi_270 | 3 | 3 | 0.000000727242 |
| Gossypium raimondii | Chr07 | 4 | CH_gra_138 | 3 | 3 | 0.000000517353 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_69 | 11 | 33 | 9.50138e-26 |
| Solanum lycopersicum | SL4.0ch09 | 4 | CH_sly_582 | 2 | 2 | 0.000880411 |
| Vitis vinifera | chr4 | 4 | CH_vvi_347 | 3 | 22 | 0.000266677 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |