Functional clusters
Information
- Type Gene Ontology
- Description response to copper ion
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 3 | CH_aag_100 | 3 | 4 | 0.0000513726 |
| Cucumis melo | chr05 | 3 | CH_cme_155 | 3 | 4 | 0.0000411019 |
| Cucumis sativus L. | chr2 | 3 | CH_csa_152 | 3 | 3 | 0.0000139022 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_187 | 3 | 3 | 0.0000042479 |
| Glycine max | Gm08 | 3 | CH_gma_248 | 3 | 3 | 0.0000129314 |
| Helianthus annuus | HanXRQChr09 | 3 | CH_han_319 | 4 | 8 | 0.00000110497 |
| Magnolia biondii | Chr05 | 3 | CH_mbi_113 | 6 | 26 | 0.000000000410594 |
| Malus domestica | Chr04 | 3 | CH_mdo_654 | 3 | 7 | 0.000585435 |
| Malus domestica | Chr09 | 3 | CH_mdo_729 | 3 | 8 | 0.000936225 |
| Oryza sativa ssp. japonica | chr05 | 3 | CH_osa_79 | 5 | 9 | 0.000000000214642 |
| Punica granatum | NC_045131.1 | 3 | CH_pgr_337 | 3 | 4 | 0.000308422 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_277 | 4 | 8 | 0.000000117667 |
| Solanum lycopersicum | SL4.0ch06 | 3 | CH_sly_264 | 3 | 3 | 0.00000687296 |
| Solanum pennellii | Spenn-ch06 | 3 | CH_spe_90 | 4 | 4 | 0.00000000280534 |
| Trochodendron aralioides | group2 | 3 | CH_tar_42 | 8 | 46 | 0.000000000013773 |
| Anthoceros agrestis | Sc2ySwM_117 | 4 | CH_aag_100 | 3 | 4 | 0.0000513726 |
| Cucumis melo | chr05 | 4 | CH_cme_155 | 3 | 4 | 0.0000411019 |
| Cucumis sativus L. | chr2 | 4 | CH_csa_152 | 3 | 3 | 0.0000139022 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_187 | 3 | 3 | 0.0000042479 |
| Glycine max | Gm08 | 4 | CH_gma_248 | 3 | 3 | 0.0000129314 |
| Helianthus annuus | HanXRQChr09 | 4 | CH_han_319 | 4 | 8 | 0.00000110497 |
| Magnolia biondii | Chr05 | 4 | CH_mbi_113 | 6 | 26 | 0.000000000410594 |
| Malus domestica | Chr04 | 4 | CH_mdo_654 | 3 | 7 | 0.000585435 |
| Malus domestica | Chr09 | 4 | CH_mdo_729 | 3 | 8 | 0.000936225 |
| Oryza sativa ssp. japonica | chr05 | 4 | CH_osa_79 | 5 | 9 | 0.000000000214642 |
| Punica granatum | NC_045131.1 | 4 | CH_pgr_337 | 3 | 4 | 0.000308422 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_277 | 4 | 8 | 0.000000117667 |
| Solanum lycopersicum | SL4.0ch06 | 4 | CH_sly_264 | 3 | 3 | 0.00000687296 |
| Solanum pennellii | Spenn-ch06 | 4 | CH_spe_90 | 4 | 4 | 0.00000000280534 |
| Trochodendron aralioides | group2 | 4 | CH_tar_42 | 8 | 46 | 0.000000000013773 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0010273 | detoxification of copper ion | 6 |
| GO:0071280 | cellular response to copper ion | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |