Functional clusters

Information

  • Type Gene Ontology
  • Description cellular response to oxygen-containing compound

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_7 3 CH_aly_350 4 5 0.000969609
Arabidopsis lyrata scaffold_1 3 CH_aly_72 6 6 0.0000000153395
Arabidopsis lyrata scaffold_7 4 CH_aly_350 4 5 0.000969609
Arabidopsis lyrata scaffold_1 4 CH_aly_72 6 6 0.0000000153395

Available child term results

Ontology identifier Description Number of clusters
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0019430 removal of superoxide radicals 2
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0034614 cellular response to reactive oxygen species 6
GO:0042631 cellular response to water deprivation 14
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071230 cellular response to amino acid stimulus 6
GO:0071249 cellular response to nitrate 10
GO:0071323 cellular response to chitin 12
GO:0071327 cellular response to trehalose stimulus 22
GO:0071332 cellular response to fructose stimulus 2
GO:0071333 cellular response to glucose stimulus 8
GO:0071367 cellular response to brassinosteroid stimulus 4
GO:0071370 cellular response to gibberellin stimulus 6
GO:0071395 cellular response to jasmonic acid stimulus 4
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 30
GO:0071452 cellular response to singlet oxygen 2
GO:0071457 cellular response to ozone 2
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:0106167 extracellular ATP signaling 2
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1902348 cellular response to strigolactone 6
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001