Functional clusters

Information

  • Type Gene Ontology
  • Description response to organic substance

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus A10 3 CH_bna_582 12 33 0.000408775
Davidia involucrata GWHABJS00000001 3 CH_din_342 19 70 0.000384477
Vanilla planifolia CM028150.1 3 CH_vpl_364 10 16 0.000799011
Brassica napus A10 4 CH_bna_582 12 33 0.000408775
Davidia involucrata GWHABJS00000001 4 CH_din_342 19 70 0.000384477
Vanilla planifolia CM028150.1 4 CH_vpl_364 10 16 0.000799011

Available child term results

Ontology identifier Description Number of clusters
GO:0002237 response to molecule of bacterial origin 2
GO:0002238 response to molecule of fungal origin 14
GO:0002240 response to molecule of oomycetes origin 4
GO:0006982 response to lipid hydroperoxide 2
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0009723 response to ethylene 12
GO:0009725 response to hormone 12
GO:0009733 response to auxin 420
GO:0009734 auxin-activated signaling pathway 74
GO:0009735 response to cytokinin 42
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009737 response to abscisic acid 10
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009739 response to gibberellin 12
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009741 response to brassinosteroid 14
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009749 response to glucose 2
GO:0009750 response to fructose 4
GO:0009751 response to salicylic acid 18
GO:0009753 response to jasmonic acid 6
GO:0009755 hormone-mediated signaling pathway 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010037 response to carbon dioxide 6
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010200 response to chitin 28
GO:0010266 response to vitamin B1 40
GO:0010315 auxin efflux 16
GO:0010353 response to trehalose 2
GO:0010555 response to mannitol 10
GO:0010583 response to cyclopentenone 2
GO:0014070 response to organic cyclic compound 4
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031000 response to caffeine 18
GO:0031001 response to brefeldin A 4
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0032491 detection of molecule of fungal origin 32
GO:0032497 detection of lipopolysaccharide 2
GO:0032870 cellular response to hormone stimulus 2
GO:0033198 response to ATP 2
GO:0033274 response to vitamin B2 30
GO:0033591 response to L-ascorbic acid 2
GO:0034097 response to cytokine 2
GO:0034620 cellular response to unfolded protein 20
GO:0035967 cellular response to topologically incorrect protein 2
GO:0043201 response to leucine 12
GO:0043434 response to peptide hormone 2
GO:0045471 response to ethanol 50
GO:0046898 response to cycloheximide 2
GO:0060416 response to growth hormone 14
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0070542 response to fatty acid 2
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071219 cellular response to molecule of bacterial origin 6
GO:0071226 cellular response to molecule of fungal origin 4
GO:0071230 cellular response to amino acid stimulus 6
GO:0071323 cellular response to chitin 12
GO:0071327 cellular response to trehalose stimulus 22
GO:0071332 cellular response to fructose stimulus 2
GO:0071333 cellular response to glucose stimulus 8
GO:0071345 cellular response to cytokine stimulus 2
GO:0071360 cellular response to exogenous dsRNA 8
GO:0071367 cellular response to brassinosteroid stimulus 4
GO:0071369 cellular response to ethylene stimulus 8
GO:0071370 cellular response to gibberellin stimulus 6
GO:0071395 cellular response to jasmonic acid stimulus 4
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 30
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0072708 response to sorbitol 16
GO:0072722 response to amitrole 16
GO:0072756 cellular response to paraquat 8
GO:0080021 response to benzoic acid 14
GO:0080026 response to indolebutyric acid 2
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080094 response to trehalose-6-phosphate 4
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0080184 response to phenylpropanoid 54
GO:0098755 maintenance of seed dormancy by absisic acid 6
GO:0106167 extracellular ATP signaling 2
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1901652 response to peptide 2
GO:1902065 response to L-glutamate 4
GO:1902347 response to strigolactone 2
GO:1902348 cellular response to strigolactone 6
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1904975 response to bleomycin 4
GO:1905582 response to mannose 8
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001