Functional clusters

Information

  • Type Gene Ontology
  • Description cellular response to oxidative stress

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 3 CH_amhyb_123 3 3 0.000131168
Beta vulgaris Chr6_EL10_PGA_scaffold0 3 CH_bvu_109 4 5 0.00000104925
Chenopodium quinoa C_Quinoa_Scaffold_1000 3 CH_cqu_227 4 5 0.00000239416
Chlamydomonas reinhardtii chromosome_14 3 CH_cre_44 4 10 0.0000376205
Fragaria x ananassa Fvb5-4 3 CH_fan_333 4 10 0.0000410223
Gossypium hirsutum A08 3 CH_ghi_311 4 5 0.00000313975
Gossypium hirsutum D08 3 CH_ghi_563 3 3 0.000373785
Gossypium raimondii Chr04 3 CH_gra_278 3 3 0.000216064
Lactuca sativa Lsat_1_v8_lg_8 3 CH_lsa_217 6 31 0.000000752037
Lactuca sativa Lsat_1_v8_lg_3 3 CH_lsa_502 3 4 0.000866627
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_369 5 23 0.00000239731
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 4 CH_amhyb_123 3 3 0.000131168
Beta vulgaris Chr6_EL10_PGA_scaffold0 4 CH_bvu_109 4 5 0.00000104925
Chenopodium quinoa C_Quinoa_Scaffold_1000 4 CH_cqu_227 4 5 0.00000239416
Chlamydomonas reinhardtii chromosome_14 4 CH_cre_44 4 10 0.0000376205
Fragaria x ananassa Fvb5-4 4 CH_fan_333 4 10 0.0000410223
Gossypium hirsutum A08 4 CH_ghi_311 4 5 0.00000313975
Gossypium hirsutum D08 4 CH_ghi_563 3 3 0.000373785
Gossypium raimondii Chr04 4 CH_gra_278 3 3 0.000216064
Lactuca sativa Lsat_1_v8_lg_8 4 CH_lsa_217 6 31 0.000000752037
Lactuca sativa Lsat_1_v8_lg_3 4 CH_lsa_502 3 4 0.000866627
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_369 5 23 0.00000239731

Available child term results

Ontology identifier Description Number of clusters
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0019430 removal of superoxide radicals 2
GO:0034614 cellular response to reactive oxygen species 6
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0071452 cellular response to singlet oxygen 2
GO:0071457 cellular response to ozone 2
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:1900409 positive regulation of cellular response to oxidative stress 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001