Functional clusters
Information
- Type Gene Ontology
- Description response to phenylpropanoid
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 3 | CH_aar_166 | 2 | 2 | 0.0000912326 |
| Actinidia chinensis | Lachesis_group4 | 3 | CH_ach_42 | 3 | 4 | 0.0000000708177 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 3 | CH_arhy_175 | 7 | 58 | 0.000000000044097 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 3 | CH_arhy_190 | 7 | 73 | 0.000000000237792 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 3 | CH_arhy_29 | 10 | 17 | 1.17937e-25 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 3 | CH_arhy_85 | 7 | 12 | 1.17926e-16 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 3 | CH_bvu_143 | 3 | 13 | 0.0000149589 |
| Cicer arietinum L. | Ca_LG6_v3 | 3 | CH_car_119 | 2 | 2 | 0.0000778301 |
| Coffea canephora | chr11 | 3 | CH_ccan_231 | 2 | 4 | 0.00007666 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_227 | 2 | 2 | 0.0000757346 |
| Carya illinoinensis | Chr05 | 3 | CH_cil_159 | 3 | 3 | 0.00000000576299 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2862 | 3 | CH_cqu_439 | 2 | 2 | 0.000284293 |
| Eucalyptus grandis | Chr07 | 3 | CH_egr_64 | 7 | 8 | 2.53324e-23 |
| Eutrema salsugineum | scaffold_6 | 3 | CH_esa_156 | 2 | 2 | 0.0000761499 |
| Lonicera japonica | GWHAAZE00000006 | 3 | CH_lonja_409 | 2 | 2 | 0.0000598874 |
| Manihot esculenta | Chromosome15 | 3 | CH_mes_67 | 5 | 7 | 0.0000000000000459859 |
| Nelumbo nucifera | chr5 | 3 | CH_nnu_25 | 5 | 10 | 0.000000000000061042 |
| Olea europaea | chr8 | 3 | CH_oeu_182 | 3 | 45 | 0.0000605811 |
| Punica granatum | NC_045132.1 | 3 | CH_pgr_13 | 7 | 12 | 4.00778e-19 |
| Papaver somniferum | NC_039368.1 | 3 | CH_pso_15 | 11 | 27 | 2.03453e-24 |
| Papaver somniferum | NW_020647637.1 | 3 | CH_pso_17 | 9 | 12 | 1.31462e-22 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_24 | 9 | 19 | 5.50167e-20 |
| Papaver somniferum | NC_039362.1 | 3 | CH_pso_254 | 4 | 6 | 0.000000175344 |
| Papaver somniferum | NW_020646860.1 | 3 | CH_pso_256 | 5 | 22 | 0.000000175582 |
| Quercus lobata | 3 | 3 | CH_qlo_401 | 3 | 5 | 0.0000000399821 |
| Striga asiatica | scaffold234 | 3 | CH_sas_59 | 2 | 2 | 0.0000625371 |
| Simmondsia chinensis | GWHAASQ00000011 | 3 | CH_sci_80 | 3 | 9 | 0.000000913213 |
| Aethionema arabicum | LG-2 | 4 | CH_aar_166 | 2 | 2 | 0.0000912326 |
| Actinidia chinensis | Lachesis_group4 | 4 | CH_ach_42 | 3 | 4 | 0.0000000708177 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 4 | CH_arhy_175 | 7 | 58 | 0.000000000044097 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 4 | CH_arhy_190 | 7 | 73 | 0.000000000237792 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 4 | CH_arhy_29 | 10 | 17 | 1.17937e-25 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 4 | CH_arhy_85 | 7 | 12 | 1.17926e-16 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 4 | CH_bvu_143 | 3 | 13 | 0.0000149589 |
| Cicer arietinum L. | Ca_LG6_v3 | 4 | CH_car_119 | 2 | 2 | 0.0000778301 |
| Coffea canephora | chr11 | 4 | CH_ccan_231 | 2 | 4 | 0.00007666 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_227 | 2 | 2 | 0.0000757346 |
| Carya illinoinensis | Chr05 | 4 | CH_cil_159 | 3 | 3 | 0.00000000576299 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2862 | 4 | CH_cqu_439 | 2 | 2 | 0.000284293 |
| Eucalyptus grandis | Chr07 | 4 | CH_egr_64 | 7 | 8 | 2.53324e-23 |
| Eutrema salsugineum | scaffold_6 | 4 | CH_esa_156 | 2 | 2 | 0.0000761499 |
| Lonicera japonica | GWHAAZE00000006 | 4 | CH_lonja_409 | 2 | 2 | 0.0000598874 |
| Manihot esculenta | Chromosome15 | 4 | CH_mes_67 | 5 | 7 | 0.0000000000000459859 |
| Nelumbo nucifera | chr5 | 4 | CH_nnu_25 | 5 | 10 | 0.000000000000061042 |
| Olea europaea | chr8 | 4 | CH_oeu_182 | 3 | 45 | 0.0000605811 |
| Punica granatum | NC_045132.1 | 4 | CH_pgr_13 | 7 | 12 | 4.00778e-19 |
| Papaver somniferum | NC_039368.1 | 4 | CH_pso_15 | 11 | 27 | 2.03453e-24 |
| Papaver somniferum | NW_020647637.1 | 4 | CH_pso_17 | 9 | 12 | 1.31462e-22 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_24 | 9 | 19 | 5.50167e-20 |
| Papaver somniferum | NC_039362.1 | 4 | CH_pso_254 | 4 | 6 | 0.000000175344 |
| Papaver somniferum | NW_020646860.1 | 4 | CH_pso_256 | 5 | 22 | 0.000000175582 |
| Quercus lobata | 3 | 4 | CH_qlo_401 | 3 | 5 | 0.0000000399821 |
| Striga asiatica | scaffold234 | 4 | CH_sas_59 | 2 | 2 | 0.0000625371 |
| Simmondsia chinensis | GWHAASQ00000011 | 4 | CH_sci_80 | 3 | 9 | 0.000000913213 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |