Functional clusters

Information

  • Type Gene Ontology
  • Description toxin catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 3 CH_aar_130 3 3 0.0000252709
Arabidopsis lyrata scaffold_1 3 CH_aly_194 3 3 0.00005513
Arabidopsis lyrata scaffold_1 3 CH_aly_86 4 4 0.0000000636837
Avicennia marina ScioBoG_18782_HRSCAF_18867 3 CH_ama_37 3 3 0.00000624499
Arabidopsis thaliana Chr1 3 CH_ath_136 5 15 0.0000000206954
Arabidopsis thaliana Chr1 3 CH_ath_325 3 3 0.0000186893
Arabidopsis thaliana Chr2 3 CH_ath_35 7 14 0.0000000000000079724
Arabidopsis thaliana Chr5 3 CH_ath_404 3 5 0.0000747218
Brassica carinata ChrB06 3 CH_bca_523 3 4 0.0000504946
Brassica oleracea C6 3 CH_bol_103 4 6 0.000000047851
Brassica oleracea C5 3 CH_bol_221 3 3 0.0000158337
Brassica rapa A04 3 CH_bra_230 3 5 0.000252363
Brassica rapa A07 3 CH_bra_66 4 4 0.000000019526
Camellia sinensis var. sinensis Chr4 3 CH_camsi_384 3 3 0.0000041949
Camellia sinensis var. sinensis Chr14 3 CH_camsi_450 3 4 0.000016774
Cannabis sativa NC_044371.1 3 CH_cansat_172 3 3 0.0000148762
Cannabis sativa NC_044378.1 3 CH_cansat_30 7 13 0.00000000000000519271
Citrus clementina scaffold_3 3 CH_ccl_431 3 10 0.000984939
Cardamine hirsuta Chr1 3 CH_chi_208 3 3 0.0000511702
Cucumis melo chr01 3 CH_cme_62 4 4 0.00000000431572
Chenopodium quinoa C_Quinoa_Scaffold_2244 3 CH_cqu_138 5 21 0.000000061656
Capsella rubella scaffold_1 3 CH_cru_117 4 4 0.0000000964578
Daucus carota DCARv2_Chr3 3 CH_dca_19 6 6 4.40891e-16
Durio zibethinus NW_019167993.1 3 CH_dzi_186 3 4 0.000022819
Durio zibethinus NW_019168492.1 3 CH_dzi_215 3 5 0.0000570264
Erigeron canadensis Conyza_canadensis_scaffold:1 3 CH_eca_191 3 4 0.00000439671
Erythranthe guttata scaffold_4 3 CH_egut_208 3 3 0.00000445382
Helianthus annuus HanXRQChr13 3 CH_han_386 3 3 0.0000090942
Lonicera japonica GWHAAZE00000001 3 CH_lonja_339 3 3 0.0000139878
Lactuca sativa Lsat_1_v8_lg_6 3 CH_lsa_10 10 11 6.80318e-26
Magnolia biondii Chr19 3 CH_mbi_277 4 10 0.00000126305
Malus domestica Chr04 3 CH_mdo_319 3 3 0.00000496124
Manihot esculenta Chromosome09 3 CH_mes_23 9 9 2.74648e-24
Prunus persica Pp02 3 CH_ppe_264 3 3 0.0000111018
Papaver somniferum NC_039361.1 3 CH_pso_34 7 8 1.53565e-18
Papaver somniferum NC_039365.1 3 CH_pso_68 6 9 0.000000000000042069
Schrenkiella parvula ch1-1 3 CH_spa_101 3 3 0.0000304633
Schrenkiella parvula ch1-1 3 CH_spa_102 3 3 0.0000304633
Schrenkiella parvula ch5-7 3 CH_spa_135 3 4 0.000121758
Theobroma cacao Chromosome_2 3 CH_tca_228 3 4 0.0000180162
Tarenaya hassleriana NW_010969548.1 3 CH_tha_84 3 3 0.0000214056
Trifolium pratense Tp57577_TGAC_v2_LG1 3 CH_tpr_141 3 3 0.00000584491
Tripterygium wilfordii NC_052237.1 3 CH_twi_173 3 3 0.0000121383
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_43 5 5 0.0000000000147302
Aethionema arabicum LG-1 4 CH_aar_130 3 3 0.0000252709
Arabidopsis lyrata scaffold_1 4 CH_aly_194 3 3 0.00005513
Arabidopsis lyrata scaffold_1 4 CH_aly_86 4 4 0.0000000636837
Avicennia marina ScioBoG_18782_HRSCAF_18867 4 CH_ama_37 3 3 0.00000624499
Arabidopsis thaliana Chr1 4 CH_ath_136 5 15 0.0000000206954
Arabidopsis thaliana Chr1 4 CH_ath_325 3 3 0.0000186893
Arabidopsis thaliana Chr2 4 CH_ath_35 7 14 0.0000000000000079724
Arabidopsis thaliana Chr5 4 CH_ath_404 3 5 0.0000747218
Brassica carinata ChrB06 4 CH_bca_523 3 4 0.0000504946
Brassica oleracea C6 4 CH_bol_103 4 6 0.000000047851
Brassica oleracea C5 4 CH_bol_221 3 3 0.0000158337
Brassica rapa A04 4 CH_bra_230 3 5 0.000252363
Brassica rapa A07 4 CH_bra_66 4 4 0.000000019526
Camellia sinensis var. sinensis Chr4 4 CH_camsi_384 3 3 0.0000041949
Camellia sinensis var. sinensis Chr14 4 CH_camsi_450 3 4 0.000016774
Cannabis sativa NC_044371.1 4 CH_cansat_172 3 3 0.0000148762
Cannabis sativa NC_044378.1 4 CH_cansat_30 7 13 0.00000000000000519271
Citrus clementina scaffold_3 4 CH_ccl_431 3 10 0.000984939
Cardamine hirsuta Chr1 4 CH_chi_208 3 3 0.0000511702
Cucumis melo chr01 4 CH_cme_62 4 4 0.00000000431572
Chenopodium quinoa C_Quinoa_Scaffold_2244 4 CH_cqu_138 5 21 0.000000061656
Capsella rubella scaffold_1 4 CH_cru_117 4 4 0.0000000964578
Daucus carota DCARv2_Chr3 4 CH_dca_19 6 6 4.40891e-16
Durio zibethinus NW_019167993.1 4 CH_dzi_186 3 4 0.000022819
Durio zibethinus NW_019168492.1 4 CH_dzi_215 3 5 0.0000570264
Erigeron canadensis Conyza_canadensis_scaffold:1 4 CH_eca_191 3 4 0.00000439671
Erythranthe guttata scaffold_4 4 CH_egut_208 3 3 0.00000445382
Helianthus annuus HanXRQChr13 4 CH_han_386 3 3 0.0000090942
Lonicera japonica GWHAAZE00000001 4 CH_lonja_339 3 3 0.0000139878
Lactuca sativa Lsat_1_v8_lg_6 4 CH_lsa_10 10 11 6.80318e-26
Magnolia biondii Chr19 4 CH_mbi_277 4 10 0.00000126305
Malus domestica Chr04 4 CH_mdo_319 3 3 0.00000496124
Manihot esculenta Chromosome09 4 CH_mes_23 9 9 2.74648e-24
Prunus persica Pp02 4 CH_ppe_264 3 3 0.0000111018
Papaver somniferum NC_039361.1 4 CH_pso_34 7 8 1.53565e-18
Papaver somniferum NC_039365.1 4 CH_pso_68 6 9 0.000000000000042069
Schrenkiella parvula ch1-1 4 CH_spa_101 3 3 0.0000304633
Schrenkiella parvula ch1-1 4 CH_spa_102 3 3 0.0000304633
Schrenkiella parvula ch5-7 4 CH_spa_135 3 4 0.000121758
Theobroma cacao Chromosome_2 4 CH_tca_228 3 4 0.0000180162
Tarenaya hassleriana NW_010969548.1 4 CH_tha_84 3 3 0.0000214056
Trifolium pratense Tp57577_TGAC_v2_LG1 4 CH_tpr_141 3 3 0.00000584491
Tripterygium wilfordii NC_052237.1 4 CH_twi_173 3 3 0.0000121383
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_43 5 5 0.0000000000147302

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001