Functional clusters
Information
- Type Gene Ontology
- Description response to cytokinin
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 3 | CH_aag_118 | 4 | 6 | 0.000098239 |
| Amborella trichopoda | AmTr_v1.0_scaffold00166 | 3 | CH_atr_308 | 4 | 7 | 0.000590782 |
| Camellia sinensis var. sinensis | Chr15 | 3 | CH_camsi_167 | 9 | 42 | 0.00000000360349 |
| Camellia sinensis var. sinensis | Chr12 | 3 | CH_camsi_804 | 4 | 8 | 0.000737642 |
| Cannabis sativa | NC_044373.1 | 3 | CH_cansat_318 | 4 | 7 | 0.000463989 |
| Capsicum annuum | PGAv.1.6.scaffold160 | 3 | CH_can_235 | 4 | 4 | 0.00000663288 |
| Carya illinoinensis | Chr06 | 3 | CH_cil_380 | 4 | 5 | 0.000147093 |
| Corchorus olitorius | AWUE01021135.1 | 3 | CH_col_44 | 4 | 4 | 0.0000026898 |
| Capsella rubella | scaffold_6 | 3 | CH_cru_183 | 4 | 4 | 0.0000121197 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_222 | 4 | 5 | 0.0000153602 |
| Helianthus annuus | HanXRQChr16 | 3 | CH_han_112 | 9 | 22 | 0.0000000000115659 |
| Helianthus annuus | HanXRQChr13 | 3 | CH_han_366 | 5 | 8 | 0.00000425822 |
| Lotus japonicus | chr6 | 3 | CH_lja_193 | 4 | 4 | 0.0000310931 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_261 | 5 | 9 | 0.0000058655 |
| Prunus persica | Pp06 | 3 | CH_ppe_402 | 4 | 6 | 0.000309407 |
| Quercus lobata | 6 | 3 | CH_qlo_431 | 5 | 5 | 0.000000104291 |
| Rhododendron simsii | chr13 | 3 | CH_rsi_331 | 5 | 13 | 0.0000448516 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_864 | 5 | 7 | 0.0000132664 |
| Solanum lycopersicum | SL4.0ch03 | 3 | CH_sly_28 | 10 | 11 | 1.8548e-19 |
| Tripterygium wilfordii | NC_052241.1 | 3 | CH_twi_149 | 5 | 7 | 0.00000434201 |
| Tripterygium wilfordii | NC_052244.1 | 3 | CH_twi_290 | 8 | 73 | 0.000348655 |
| Anthoceros agrestis | Sc2ySwM_117 | 4 | CH_aag_118 | 4 | 6 | 0.000098239 |
| Amborella trichopoda | AmTr_v1.0_scaffold00166 | 4 | CH_atr_308 | 4 | 7 | 0.000590782 |
| Camellia sinensis var. sinensis | Chr15 | 4 | CH_camsi_167 | 9 | 42 | 0.00000000360349 |
| Camellia sinensis var. sinensis | Chr12 | 4 | CH_camsi_804 | 4 | 8 | 0.000737642 |
| Cannabis sativa | NC_044373.1 | 4 | CH_cansat_318 | 4 | 7 | 0.000463989 |
| Capsicum annuum | PGAv.1.6.scaffold160 | 4 | CH_can_235 | 4 | 4 | 0.00000663288 |
| Carya illinoinensis | Chr06 | 4 | CH_cil_380 | 4 | 5 | 0.000147093 |
| Corchorus olitorius | AWUE01021135.1 | 4 | CH_col_44 | 4 | 4 | 0.0000026898 |
| Capsella rubella | scaffold_6 | 4 | CH_cru_183 | 4 | 4 | 0.0000121197 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_222 | 4 | 5 | 0.0000153602 |
| Helianthus annuus | HanXRQChr16 | 4 | CH_han_112 | 9 | 22 | 0.0000000000115659 |
| Helianthus annuus | HanXRQChr13 | 4 | CH_han_366 | 5 | 8 | 0.00000425822 |
| Lotus japonicus | chr6 | 4 | CH_lja_193 | 4 | 4 | 0.0000310931 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_261 | 5 | 9 | 0.0000058655 |
| Prunus persica | Pp06 | 4 | CH_ppe_402 | 4 | 6 | 0.000309407 |
| Quercus lobata | 6 | 4 | CH_qlo_431 | 5 | 5 | 0.000000104291 |
| Rhododendron simsii | chr13 | 4 | CH_rsi_331 | 5 | 13 | 0.0000448516 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_864 | 5 | 7 | 0.0000132664 |
| Solanum lycopersicum | SL4.0ch03 | 4 | CH_sly_28 | 10 | 11 | 1.8548e-19 |
| Tripterygium wilfordii | NC_052241.1 | 4 | CH_twi_149 | 5 | 7 | 0.00000434201 |
| Tripterygium wilfordii | NC_052244.1 | 4 | CH_twi_290 | 8 | 73 | 0.000348655 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009736 | cytokinin-activated signaling pathway | 16 |
| GO:0080036 | regulation of cytokinin-activated signaling pathway | 10 |
| GO:0080037 | negative regulation of cytokinin-activated signaling pathway | 24 |
| GO:0080038 | positive regulation of cytokinin-activated signaling pathway | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |