Functional clusters

Information

  • Type Gene Ontology
  • Description response to oxygen-containing compound

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR05 3 CH_aox_152 11 19 0.0000282937
Brassica napus A05 3 CH_bna_463 6 6 0.0001035
Erigeron canadensis Conyza_canadensis_scaffold:6 3 CH_eca_379 13 48 0.000317959
Sequoiadendron giganteum chr1 3 CH_sgi_786 16 43 0.00000369696
Aquilegia oxysepala CHR05 4 CH_aox_152 11 19 0.0000282937
Brassica napus A05 4 CH_bna_463 6 6 0.0001035
Erigeron canadensis Conyza_canadensis_scaffold:6 4 CH_eca_379 13 48 0.000317959
Sequoiadendron giganteum chr1 4 CH_sgi_786 16 43 0.00000369696

Available child term results

Ontology identifier Description Number of clusters
GO:0000302 response to reactive oxygen species 4
GO:0000303 response to superoxide 16
GO:0000304 response to singlet oxygen 18
GO:0006982 response to lipid hydroperoxide 2
GO:0009269 response to desiccation 26
GO:0009270 response to humidity 2
GO:0009413 response to flooding 2
GO:0009414 response to water deprivation 8
GO:0009415 response to water 10
GO:0009737 response to abscisic acid 10
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009739 response to gibberellin 12
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009741 response to brassinosteroid 14
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009749 response to glucose 2
GO:0009750 response to fructose 4
GO:0009751 response to salicylic acid 18
GO:0009753 response to jasmonic acid 6
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009819 drought recovery 18
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010037 response to carbon dioxide 6
GO:0010167 response to nitrate 10
GO:0010193 response to ozone 2
GO:0010200 response to chitin 28
GO:0010353 response to trehalose 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0010555 response to mannitol 10
GO:0019430 removal of superoxide radicals 2
GO:0031001 response to brefeldin A 4
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0032497 detection of lipopolysaccharide 2
GO:0033194 response to hydroperoxide 2
GO:0033198 response to ATP 2
GO:0033591 response to L-ascorbic acid 2
GO:0034614 cellular response to reactive oxygen species 6
GO:0042542 response to hydrogen peroxide 6
GO:0042631 cellular response to water deprivation 14
GO:0043201 response to leucine 12
GO:0043434 response to peptide hormone 2
GO:0045471 response to ethanol 50
GO:0046898 response to cycloheximide 2
GO:0060416 response to growth hormone 14
GO:0070542 response to fatty acid 2
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071230 cellular response to amino acid stimulus 6
GO:0071249 cellular response to nitrate 10
GO:0071323 cellular response to chitin 12
GO:0071327 cellular response to trehalose stimulus 22
GO:0071332 cellular response to fructose stimulus 2
GO:0071333 cellular response to glucose stimulus 8
GO:0071367 cellular response to brassinosteroid stimulus 4
GO:0071370 cellular response to gibberellin stimulus 6
GO:0071395 cellular response to jasmonic acid stimulus 4
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 30
GO:0071452 cellular response to singlet oxygen 2
GO:0071457 cellular response to ozone 2
GO:0071731 response to nitric oxide 6
GO:0072708 response to sorbitol 16
GO:0080021 response to benzoic acid 14
GO:0080026 response to indolebutyric acid 2
GO:0080033 response to nitrite 2
GO:0080094 response to trehalose-6-phosphate 4
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0090547 response to low humidity 2
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:0098755 maintenance of seed dormancy by absisic acid 6
GO:0106167 extracellular ATP signaling 2
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1901652 response to peptide 2
GO:1901701 cellular response to oxygen-containing compound 4
GO:1902065 response to L-glutamate 4
GO:1902347 response to strigolactone 2
GO:1902348 cellular response to strigolactone 6
GO:1902584 positive regulation of response to water deprivation 2
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1903842 response to arsenite ion 2
GO:1904975 response to bleomycin 4
GO:1905582 response to mannose 8
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001