Functional clusters

Information

  • Type Gene Ontology
  • Description response to stress

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 3 CH_acertr_272 18 34 0.0000380733
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 3 CH_arhy_593 11 14 0.000352987
Camellia sinensis var. sinensis Chr6 3 CH_camsi_206 16 20 0.0000000144762
Camellia sinensis var. sinensis Chr15 3 CH_camsi_422 15 23 0.00000991204
Capsicum annuum PGAv.1.6.scaffold710 3 CH_can_138 19 26 0.0000000200128
Cucumis melo chr01 3 CH_cme_192 25 72 0.000142184
Corchorus olitorius AWUE01020789.1 3 CH_col_98 9 11 0.000550586
Carica papaya supercontig_3 3 CH_cpa_279 26 77 0.000812622
Durio zibethinus NW_019168481.1 3 CH_dzi_155 13 16 0.0000040442
Glycine max Gm03 3 CH_gma_226 30 71 0.0000029387
Lactuca sativa Lsat_1_v8_lg_5 3 CH_lsa_266 11 12 0.00000731253
Magnolia biondii Chr11 3 CH_mbi_147 30 72 0.0000000042404
Magnolia biondii Chr14 3 CH_mbi_368 27 80 0.0000220449
Medicago truncatula chr6 3 CH_mtr_376 10 10 0.00000228296
Medicago truncatula chr3 3 CH_mtr_454 12 16 0.0000249276
Papaver somniferum NW_020620714.1 3 CH_pso_642 22 69 0.000628389
Salvia bowleyana GWHASIU00000006 3 CH_sbo_113 29 63 0.000000000321804
Sequoiadendron giganteum chr4 3 CH_sgi_1181 9 9 0.000210974
Solanum pennellii Spenn-ch03 3 CH_spe_186 25 70 0.00000149522
Solanum pennellii Spenn-ch09 3 CH_spe_264 25 79 0.0000290424
Solanum pennellii Spenn-ch03 3 CH_spe_402 20 59 0.000386108
Solanum tuberosum ST4.03ch11 3 CH_stu_262 30 75 0.00000160555
Solanum tuberosum ST4.03ch03 3 CH_stu_549 25 67 0.000360289
Acer truncatum chr12 4 CH_acertr_272 18 34 0.0000380733
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 4 CH_arhy_593 11 14 0.000352987
Camellia sinensis var. sinensis Chr6 4 CH_camsi_206 16 20 0.0000000144762
Camellia sinensis var. sinensis Chr15 4 CH_camsi_422 15 23 0.00000991204
Capsicum annuum PGAv.1.6.scaffold710 4 CH_can_138 19 26 0.0000000200128
Cucumis melo chr01 4 CH_cme_192 25 72 0.000142184
Corchorus olitorius AWUE01020789.1 4 CH_col_98 9 11 0.000550586
Carica papaya supercontig_3 4 CH_cpa_279 26 77 0.000812622
Durio zibethinus NW_019168481.1 4 CH_dzi_155 13 16 0.0000040442
Glycine max Gm03 4 CH_gma_226 30 71 0.0000029387
Lactuca sativa Lsat_1_v8_lg_5 4 CH_lsa_266 11 12 0.00000731253
Magnolia biondii Chr11 4 CH_mbi_147 30 72 0.0000000042404
Magnolia biondii Chr14 4 CH_mbi_368 27 80 0.0000220449
Medicago truncatula chr6 4 CH_mtr_376 10 10 0.00000228296
Medicago truncatula chr3 4 CH_mtr_454 12 16 0.0000249276
Papaver somniferum NW_020620714.1 4 CH_pso_642 22 69 0.000628389
Salvia bowleyana GWHASIU00000006 4 CH_sbo_113 29 63 0.000000000321804
Sequoiadendron giganteum chr4 4 CH_sgi_1181 9 9 0.000210974
Solanum pennellii Spenn-ch03 4 CH_spe_186 25 70 0.00000149522
Solanum pennellii Spenn-ch09 4 CH_spe_264 25 79 0.0000290424
Solanum pennellii Spenn-ch03 4 CH_spe_402 20 59 0.000386108
Solanum tuberosum ST4.03ch11 4 CH_stu_262 30 75 0.00000160555
Solanum tuberosum ST4.03ch03 4 CH_stu_549 25 67 0.000360289

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 6
GO:0000302 response to reactive oxygen species 4
GO:0000303 response to superoxide 16
GO:0000304 response to singlet oxygen 18
GO:0000706 meiotic DNA double-strand break processing 4
GO:0000719 photoreactive repair 12
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000724 double-strand break repair via homologous recombination 6
GO:0000731 DNA synthesis involved in DNA repair 4
GO:0001666 response to hypoxia 20
GO:0001778 plasma membrane repair 8
GO:0002213 defense response to insect 14
GO:0002215 defense response to nematode 4
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002229 defense response to oomycetes 16
GO:0002230 positive regulation of defense response to virus by host 40
GO:0002679 respiratory burst involved in defense response 58
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 30
GO:0006281 DNA repair 16
GO:0006282 regulation of DNA repair 2
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006289 nucleotide-excision repair 8
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006303 double-strand break repair via nonhomologous end joining 2
GO:0006952 defense response 284
GO:0006968 cellular defense response 2
GO:0006971 hypotonic response 2
GO:0006972 hyperosmotic response 8
GO:0006974 cellular response to DNA damage stimulus 6
GO:0006979 response to oxidative stress 18
GO:0006982 response to lipid hydroperoxide 2
GO:0006983 ER overload response 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0006995 cellular response to nitrogen starvation 18
GO:0007095 mitotic G2 DNA damage checkpoint signaling 8
GO:0009267 cellular response to starvation 4
GO:0009269 response to desiccation 26
GO:0009408 response to heat 22
GO:0009409 response to cold 6
GO:0009413 response to flooding 2
GO:0009414 response to water deprivation 8
GO:0009611 response to wounding 12
GO:0009616 RNAi-mediated antiviral immune response 4
GO:0009626 plant-type hypersensitive response 18
GO:0009627 systemic acquired resistance 30
GO:0009631 cold acclimation 4
GO:0009635 response to herbicide 40
GO:0009651 response to salt stress 2
GO:0009682 induced systemic resistance 6
GO:0009819 drought recovery 18
GO:0009861 jasmonic acid and ethylene-dependent systemic resistance 38
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009970 cellular response to sulfate starvation 4
GO:0010048 vernalization response 14
GO:0010106 cellular response to iron ion starvation 4
GO:0010112 regulation of systemic acquired resistance 38
GO:0010186 positive regulation of cellular defense response 6
GO:0010193 response to ozone 2
GO:0010213 non-photoreactive DNA repair 2
GO:0010221 negative regulation of vernalization response 8
GO:0010273 detoxification of copper ion 6
GO:0010286 heat acclimation 26
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0010438 cellular response to sulfur starvation 12
GO:0010569 regulation of double-strand break repair via homologous recombination 8
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination 8
GO:0016036 cellular response to phosphate starvation 4
GO:0019430 removal of superoxide radicals 2
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031348 negative regulation of defense response 22
GO:0031848 protection from non-homologous end joining at telomere 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0033194 response to hydroperoxide 2
GO:0033554 cellular response to stress 16
GO:0034050 programmed cell death induced by symbiont 4
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0034224 cellular response to zinc ion starvation 8
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0034599 cellular response to oxidative stress 22
GO:0034605 cellular response to heat 6
GO:0034614 cellular response to reactive oxygen species 6
GO:0034620 cellular response to unfolded protein 20
GO:0034976 response to endoplasmic reticulum stress 20
GO:0035874 cellular response to copper ion starvation 6
GO:0035967 cellular response to topologically incorrect protein 2
GO:0036297 interstrand cross-link repair 12
GO:0042149 cellular response to glucose starvation 2
GO:0042276 error-prone translesion synthesis 36
GO:0042538 hyperosmotic salinity response 4
GO:0042542 response to hydrogen peroxide 6
GO:0042594 response to starvation 2
GO:0042631 cellular response to water deprivation 14
GO:0042742 defense response to bacterium 34
GO:0043157 response to cation stress 2
GO:0043247 telomere maintenance in response to DNA damage 8
GO:0043617 cellular response to sucrose starvation 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045003 double-strand break repair via synthesis-dependent strand annealing 2
GO:0045087 innate immune response 92
GO:0045088 regulation of innate immune response 4
GO:0045739 positive regulation of DNA repair 4
GO:0050691 regulation of defense response to virus by host 2
GO:0050829 defense response to Gram-negative bacterium 32
GO:0050832 defense response to fungus 126
GO:0051103 DNA ligation involved in DNA repair 24
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 4
GO:0051245 negative regulation of cellular defense response 8
GO:0051365 cellular response to potassium ion starvation 6
GO:0051607 defense response to virus 106
GO:0051841 positive regulation by host of cytolysis of symbiont cells 32
GO:0052542 defense response by callose deposition 6
GO:0061760 antifungal innate immune response 2
GO:0070417 cellular response to cold 10
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 4
GO:0071452 cellular response to singlet oxygen 2
GO:0071454 cellular response to anoxia 4
GO:0071456 cellular response to hypoxia 48
GO:0071457 cellular response to ozone 2
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 6
GO:0071497 cellular response to freezing 8
GO:0071585 detoxification of cadmium ion 2
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0072732 cellular response to calcium ion starvation 74
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080135 regulation of cellular response to stress 4
GO:0080149 sucrose induced translational repression 2
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0080183 response to photooxidative stress 16
GO:0090549 response to carbon starvation 4
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:0097510 base-excision repair, AP site formation via deaminated base removal 12
GO:0098542 defense response to other organism 14
GO:0140426 PAMP-triggered immunity signalling pathway 2
GO:1900034 regulation of cellular response to heat 6
GO:1900035 negative regulation of cellular response to heat 2
GO:1900036 positive regulation of cellular response to heat 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900150 regulation of defense response to fungus 12
GO:1900366 negative regulation of defense response to insect 2
GO:1900367 positive regulation of defense response to insect 6
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1900424 regulation of defense response to bacterium 12
GO:1900425 negative regulation of defense response to bacterium 36
GO:1900426 positive regulation of defense response to bacterium 8
GO:1901000 regulation of response to salt stress 2
GO:1901001 negative regulation of response to salt stress 20
GO:1901002 positive regulation of response to salt stress 2
GO:1901672 positive regulation of systemic acquired resistance 8
GO:1902288 regulation of defense response to oomycetes 40
GO:1902289 negative regulation of defense response to oomycetes 4
GO:1902290 positive regulation of defense response to oomycetes 22
GO:1902584 positive regulation of response to water deprivation 2
GO:1903034 regulation of response to wounding 14
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1905034 regulation of antifungal innate immune response 8
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:1990110 callus formation 22
GO:1990532 stress response to nickel ion 4
GO:1990918 double-strand break repair involved in meiotic recombination 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 4
GO:2000071 regulation of defense response by callose deposition 14

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001