Functional clusters
Information
- Type Gene Ontology
- Description response to endoplasmic reticulum stress
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 3 | CH_acertr_331 | 3 | 3 | 0.0000794703 |
| Camellia sinensis var. sinensis | Chr12 | 3 | CH_camsi_739 | 5 | 47 | 0.000432482 |
| Chara braunii | BFEA01000402 | 3 | CH_cbr_118 | 3 | 4 | 0.000101621 |
| Chlamydomonas reinhardtii | chromosome_2 | 3 | CH_cre_48 | 3 | 3 | 0.0000567567 |
| Helianthus annuus | HanXRQChr16 | 3 | CH_han_499 | 3 | 3 | 0.0000933253 |
| Malus domestica | Chr12 | 3 | CH_mdo_735 | 3 | 5 | 0.000985267 |
| Simmondsia chinensis | GWHAASQ00000011 | 3 | CH_sci_179 | 3 | 3 | 0.000124838 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_908 | 3 | 3 | 0.0000300308 |
| Sapria himalayana | scaffold87_1731688 | 3 | CH_shi_138 | 3 | 4 | 0.0000450992 |
| Selenicereus undatus | Scaffold_10417 | 3 | CH_sun_115 | 3 | 3 | 0.000104897 |
| Acer truncatum | chr8 | 4 | CH_acertr_331 | 3 | 3 | 0.0000794703 |
| Camellia sinensis var. sinensis | Chr12 | 4 | CH_camsi_739 | 5 | 47 | 0.000432482 |
| Chara braunii | BFEA01000402 | 4 | CH_cbr_118 | 3 | 4 | 0.000101621 |
| Chlamydomonas reinhardtii | chromosome_2 | 4 | CH_cre_48 | 3 | 3 | 0.0000567567 |
| Helianthus annuus | HanXRQChr16 | 4 | CH_han_499 | 3 | 3 | 0.0000933253 |
| Malus domestica | Chr12 | 4 | CH_mdo_735 | 3 | 5 | 0.000985267 |
| Simmondsia chinensis | GWHAASQ00000011 | 4 | CH_sci_179 | 3 | 3 | 0.000124838 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_908 | 3 | 3 | 0.0000300308 |
| Sapria himalayana | scaffold87_1731688 | 4 | CH_shi_138 | 3 | 4 | 0.0000450992 |
| Selenicereus undatus | Scaffold_10417 | 4 | CH_sun_115 | 3 | 3 | 0.000104897 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0006983 | ER overload response | 10 |
| GO:0006990 | positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response | 6 |
| GO:0030433 | ubiquitin-dependent ERAD pathway | 2 |
| GO:0030968 | endoplasmic reticulum unfolded protein response | 70 |
| GO:0034263 | positive regulation of autophagy in response to ER overload | 2 |
| GO:1900103 | positive regulation of endoplasmic reticulum unfolded protein response | 2 |
| GO:1904292 | regulation of ERAD pathway | 2 |
| GO:1904294 | positive regulation of ERAD pathway | 12 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |