Functional clusters
Information
- Type Gene Ontology
- Description defense response to bacterium
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr4 | 3 | CH_ath_7 | 19 | 27 | 2.10773e-31 |
| Brassica oleracea | C5 | 3 | CH_bol_359 | 9 | 69 | 0.000516567 |
| Camellia sinensis var. sinensis | Chr3 | 3 | CH_camsi_770 | 7 | 22 | 0.000546948 |
| Cannabis sativa | NC_044370.1 | 3 | CH_cansat_251 | 11 | 76 | 0.00014911 |
| Carya illinoinensis | Chr16 | 3 | CH_cil_323 | 5 | 5 | 0.0000540698 |
| Durio zibethinus | NW_019168026.1 | 3 | CH_dzi_32 | 14 | 30 | 0.0000000000000359701 |
| Eucalyptus grandis | Chr03 | 3 | CH_egr_204 | 18 | 53 | 0.000000000000111346 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_784 | 8 | 23 | 0.00022415 |
| Helianthus annuus | HanXRQChr12 | 3 | CH_han_198 | 7 | 8 | 0.00000000877864 |
| Magnolia biondii | Chr18 | 3 | CH_mbi_431 | 10 | 60 | 0.0000647944 |
| Manihot esculenta | Chromosome11 | 3 | CH_mes_143 | 13 | 44 | 0.0000000161688 |
| Marchantia polymorpha | scaffold_97 | 3 | CH_mpo_29 | 8 | 11 | 0.0000000103513 |
| Medicago truncatula | chr6 | 3 | CH_mtr_602 | 6 | 16 | 0.000232327 |
| Salvia bowleyana | GWHASIU00000001 | 3 | CH_sbo_301 | 7 | 21 | 0.0000284914 |
| Trochodendron aralioides | group3 | 3 | CH_tar_167 | 6 | 6 | 0.00000103364 |
| Vitis vinifera | chr9 | 3 | CH_vvi_246 | 8 | 23 | 0.0000317294 |
| Vitis vinifera | chr14 | 3 | CH_vvi_346 | 11 | 70 | 0.000260679 |
| Arabidopsis thaliana | Chr4 | 4 | CH_ath_7 | 19 | 27 | 2.10773e-31 |
| Brassica oleracea | C5 | 4 | CH_bol_359 | 9 | 69 | 0.000516567 |
| Camellia sinensis var. sinensis | Chr3 | 4 | CH_camsi_770 | 7 | 22 | 0.000546948 |
| Cannabis sativa | NC_044370.1 | 4 | CH_cansat_251 | 11 | 76 | 0.00014911 |
| Carya illinoinensis | Chr16 | 4 | CH_cil_323 | 5 | 5 | 0.0000540698 |
| Durio zibethinus | NW_019168026.1 | 4 | CH_dzi_32 | 14 | 30 | 0.0000000000000359701 |
| Eucalyptus grandis | Chr03 | 4 | CH_egr_204 | 18 | 53 | 0.000000000000111346 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_784 | 8 | 23 | 0.00022415 |
| Helianthus annuus | HanXRQChr12 | 4 | CH_han_198 | 7 | 8 | 0.00000000877864 |
| Magnolia biondii | Chr18 | 4 | CH_mbi_431 | 10 | 60 | 0.0000647944 |
| Manihot esculenta | Chromosome11 | 4 | CH_mes_143 | 13 | 44 | 0.0000000161688 |
| Marchantia polymorpha | scaffold_97 | 4 | CH_mpo_29 | 8 | 11 | 0.0000000103513 |
| Medicago truncatula | chr6 | 4 | CH_mtr_602 | 6 | 16 | 0.000232327 |
| Salvia bowleyana | GWHASIU00000001 | 4 | CH_sbo_301 | 7 | 21 | 0.0000284914 |
| Trochodendron aralioides | group3 | 4 | CH_tar_167 | 6 | 6 | 0.00000103364 |
| Vitis vinifera | chr9 | 4 | CH_vvi_246 | 8 | 23 | 0.0000317294 |
| Vitis vinifera | chr14 | 4 | CH_vvi_346 | 11 | 70 | 0.000260679 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009682 | induced systemic resistance | 6 |
| GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway | 8 |
| GO:0009866 | induced systemic resistance, ethylene mediated signaling pathway | 8 |
| GO:0050829 | defense response to Gram-negative bacterium | 32 |
| GO:1900424 | regulation of defense response to bacterium | 12 |
| GO:1900425 | negative regulation of defense response to bacterium | 36 |
| GO:1900426 | positive regulation of defense response to bacterium | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |