Functional clusters

Information

  • Type Gene Ontology
  • Description response to oxidative stress

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carpinus fangiana Cfa03 3 CH_cfa_235 9 38 0.000087777
Cucumis melo chr01 3 CH_cme_219 7 20 0.000246672
Eucalyptus grandis Chr08 3 CH_egr_224 17 51 0.000000000000767551
Eucalyptus grandis Chr04 3 CH_egr_871 9 38 0.000813879
Gossypium hirsutum A08 3 CH_ghi_632 9 42 0.000619599
Quercus lobata 6 3 CH_qlo_108 14 18 1.58118e-17
Quercus lobata 11 3 CH_qlo_583 7 11 0.00000471144
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_472 5 6 0.00002965
Theobroma cacao Chromosome_4 3 CH_tca_208 13 77 0.00000446483
Carpinus fangiana Cfa03 4 CH_cfa_235 9 38 0.000087777
Cucumis melo chr01 4 CH_cme_219 7 20 0.000246672
Eucalyptus grandis Chr08 4 CH_egr_224 17 51 0.000000000000767551
Eucalyptus grandis Chr04 4 CH_egr_871 9 38 0.000813879
Gossypium hirsutum A08 4 CH_ghi_632 9 42 0.000619599
Quercus lobata 6 4 CH_qlo_108 14 18 1.58118e-17
Quercus lobata 11 4 CH_qlo_583 7 11 0.00000471144
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_472 5 6 0.00002965
Theobroma cacao Chromosome_4 4 CH_tca_208 13 77 0.00000446483

Available child term results

Ontology identifier Description Number of clusters
GO:0000302 response to reactive oxygen species 4
GO:0000303 response to superoxide 16
GO:0000304 response to singlet oxygen 18
GO:0006982 response to lipid hydroperoxide 2
GO:0010193 response to ozone 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0019430 removal of superoxide radicals 2
GO:0033194 response to hydroperoxide 2
GO:0034599 cellular response to oxidative stress 22
GO:0034614 cellular response to reactive oxygen species 6
GO:0042542 response to hydrogen peroxide 6
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0071452 cellular response to singlet oxygen 2
GO:0071457 cellular response to ozone 2
GO:0080183 response to photooxidative stress 16
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:1900409 positive regulation of cellular response to oxidative stress 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001