Functional clusters
Information
- Type Gene Ontology
- Description response to oxidative stress
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Carpinus fangiana | Cfa03 | 3 | CH_cfa_235 | 9 | 38 | 0.000087777 |
Cucumis melo | chr01 | 3 | CH_cme_219 | 7 | 20 | 0.000246672 |
Eucalyptus grandis | Chr08 | 3 | CH_egr_224 | 17 | 51 | 0.000000000000767551 |
Eucalyptus grandis | Chr04 | 3 | CH_egr_871 | 9 | 38 | 0.000813879 |
Gossypium hirsutum | A08 | 3 | CH_ghi_632 | 9 | 42 | 0.000619599 |
Quercus lobata | 6 | 3 | CH_qlo_108 | 14 | 18 | 1.58118e-17 |
Quercus lobata | 11 | 3 | CH_qlo_583 | 7 | 11 | 0.00000471144 |
Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_472 | 5 | 6 | 0.00002965 |
Theobroma cacao | Chromosome_4 | 3 | CH_tca_208 | 13 | 77 | 0.00000446483 |
Carpinus fangiana | Cfa03 | 4 | CH_cfa_235 | 9 | 38 | 0.000087777 |
Cucumis melo | chr01 | 4 | CH_cme_219 | 7 | 20 | 0.000246672 |
Eucalyptus grandis | Chr08 | 4 | CH_egr_224 | 17 | 51 | 0.000000000000767551 |
Eucalyptus grandis | Chr04 | 4 | CH_egr_871 | 9 | 38 | 0.000813879 |
Gossypium hirsutum | A08 | 4 | CH_ghi_632 | 9 | 42 | 0.000619599 |
Quercus lobata | 6 | 4 | CH_qlo_108 | 14 | 18 | 1.58118e-17 |
Quercus lobata | 11 | 4 | CH_qlo_583 | 7 | 11 | 0.00000471144 |
Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_472 | 5 | 6 | 0.00002965 |
Theobroma cacao | Chromosome_4 | 4 | CH_tca_208 | 13 | 77 | 0.00000446483 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0000302 | response to reactive oxygen species | 4 |
GO:0000303 | response to superoxide | 16 |
GO:0000304 | response to singlet oxygen | 18 |
GO:0006982 | response to lipid hydroperoxide | 2 |
GO:0010193 | response to ozone | 2 |
GO:0010421 | hydrogen peroxide-mediated programmed cell death | 26 |
GO:0019430 | removal of superoxide radicals | 2 |
GO:0033194 | response to hydroperoxide | 2 |
GO:0034599 | cellular response to oxidative stress | 22 |
GO:0034614 | cellular response to reactive oxygen species | 6 |
GO:0042542 | response to hydrogen peroxide | 6 |
GO:0043619 | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | 6 |
GO:0071452 | cellular response to singlet oxygen | 2 |
GO:0071457 | cellular response to ozone | 2 |
GO:0080183 | response to photooxidative stress | 16 |
GO:0097468 | programmed cell death in response to reactive oxygen species | 4 |
GO:1900409 | positive regulation of cellular response to oxidative stress | 12 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |