Functional clusters

Information

  • Type Gene Ontology
  • Description cellular response to stress

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 3 CH_aag_171 5 6 0.000676162
Ceratophyllum demersum 1 3 CH_cde_47 18 65 0.000000432954
Helianthus annuus HanXRQChr10 3 CH_han_362 9 18 0.00000369345
Medicago truncatula chr1 3 CH_mtr_523 14 78 0.0000780373
Oryza sativa ssp. japonica chr07 3 CH_osa_203 7 8 0.00000284123
Oryza sativa ssp. japonica chr03 3 CH_osa_405 12 52 0.000366737
Solanum lycopersicum SL4.0ch03 3 CH_sly_451 8 15 0.000181096
Solanum pennellii Spenn-ch03 3 CH_spe_291 6 8 0.0000487766
Anthoceros agrestis Sc2ySwM_228 4 CH_aag_171 5 6 0.000676162
Ceratophyllum demersum 1 4 CH_cde_47 18 65 0.000000432954
Helianthus annuus HanXRQChr10 4 CH_han_362 9 18 0.00000369345
Medicago truncatula chr1 4 CH_mtr_523 14 78 0.0000780373
Oryza sativa ssp. japonica chr07 4 CH_osa_203 7 8 0.00000284123
Oryza sativa ssp. japonica chr03 4 CH_osa_405 12 52 0.000366737
Solanum lycopersicum SL4.0ch03 4 CH_sly_451 8 15 0.000181096
Solanum pennellii Spenn-ch03 4 CH_spe_291 6 8 0.0000487766

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 6
GO:0000706 meiotic DNA double-strand break processing 4
GO:0000719 photoreactive repair 12
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000724 double-strand break repair via homologous recombination 6
GO:0000731 DNA synthesis involved in DNA repair 4
GO:0006281 DNA repair 16
GO:0006282 regulation of DNA repair 2
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006289 nucleotide-excision repair 8
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006303 double-strand break repair via nonhomologous end joining 2
GO:0006974 cellular response to DNA damage stimulus 6
GO:0006983 ER overload response 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0006995 cellular response to nitrogen starvation 18
GO:0007095 mitotic G2 DNA damage checkpoint signaling 8
GO:0009267 cellular response to starvation 4
GO:0009626 plant-type hypersensitive response 18
GO:0009970 cellular response to sulfate starvation 4
GO:0010106 cellular response to iron ion starvation 4
GO:0010213 non-photoreactive DNA repair 2
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0010438 cellular response to sulfur starvation 12
GO:0010569 regulation of double-strand break repair via homologous recombination 8
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination 8
GO:0016036 cellular response to phosphate starvation 4
GO:0019430 removal of superoxide radicals 2
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031848 protection from non-homologous end joining at telomere 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0034224 cellular response to zinc ion starvation 8
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0034599 cellular response to oxidative stress 22
GO:0034605 cellular response to heat 6
GO:0034614 cellular response to reactive oxygen species 6
GO:0034620 cellular response to unfolded protein 20
GO:0034976 response to endoplasmic reticulum stress 20
GO:0035874 cellular response to copper ion starvation 6
GO:0035967 cellular response to topologically incorrect protein 2
GO:0036297 interstrand cross-link repair 12
GO:0042149 cellular response to glucose starvation 2
GO:0042276 error-prone translesion synthesis 36
GO:0042631 cellular response to water deprivation 14
GO:0043247 telomere maintenance in response to DNA damage 8
GO:0043617 cellular response to sucrose starvation 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045003 double-strand break repair via synthesis-dependent strand annealing 2
GO:0045739 positive regulation of DNA repair 4
GO:0051103 DNA ligation involved in DNA repair 24
GO:0051365 cellular response to potassium ion starvation 6
GO:0070417 cellular response to cold 10
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 4
GO:0071452 cellular response to singlet oxygen 2
GO:0071454 cellular response to anoxia 4
GO:0071456 cellular response to hypoxia 48
GO:0071457 cellular response to ozone 2
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 6
GO:0071497 cellular response to freezing 8
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0072732 cellular response to calcium ion starvation 74
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080135 regulation of cellular response to stress 4
GO:0080149 sucrose induced translational repression 2
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:0097510 base-excision repair, AP site formation via deaminated base removal 12
GO:1900034 regulation of cellular response to heat 6
GO:1900035 negative regulation of cellular response to heat 2
GO:1900036 positive regulation of cellular response to heat 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:1990918 double-strand break repair involved in meiotic recombination 2
GO:2000042 negative regulation of double-strand break repair via homologous recombination 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001