Functional clusters
Information
- Type Gene Ontology
- Description systemic acquired resistance
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Contig733 | 3 | CH_camsi_214 | 5 | 7 | 0.0000000256512 |
| Coffea canephora | chr6 | 3 | CH_ccan_62 | 5 | 35 | 0.0000000128553 |
| Carya illinoinensis | Chr08 | 3 | CH_cil_251 | 4 | 4 | 0.00000247548 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1360 | 3 | CH_cqu_497 | 3 | 3 | 0.000496531 |
| Davidia involucrata | GWHABJS00000085 | 3 | CH_din_17 | 9 | 9 | 5.34019e-20 |
| Davidia involucrata | GWHABJS00000085 | 3 | CH_din_18 | 9 | 9 | 5.34019e-20 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 3 | CH_eca_289 | 3 | 3 | 0.000103356 |
| Eucalyptus grandis | Chr07 | 3 | CH_egr_306 | 8 | 20 | 0.000000000252298 |
| Erythranthe guttata | scaffold_10 | 3 | CH_egut_104 | 5 | 5 | 0.00000000115171 |
| Helianthus annuus | HanXRQChr03 | 3 | CH_han_30 | 12 | 34 | 3.28936e-20 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_93 | 7 | 17 | 0.0000000000453478 |
| Quercus lobata | CM012294 | 3 | CH_qlo_452 | 5 | 8 | 0.000000191192 |
| Salvia bowleyana | GWHASIU00000002 | 3 | CH_sbo_46 | 10 | 23 | 5.52105e-18 |
| Selaginella moellendorffii | scaffold_42 | 3 | CH_smo_45 | 5 | 6 | 0.0000000820014 |
| Tripterygium wilfordii | NC_052254.1 | 3 | CH_twi_29 | 7 | 7 | 0.000000000000282219 |
| Camellia sinensis var. sinensis | Contig733 | 4 | CH_camsi_214 | 5 | 7 | 0.0000000256512 |
| Coffea canephora | chr6 | 4 | CH_ccan_62 | 5 | 35 | 0.0000000128553 |
| Carya illinoinensis | Chr08 | 4 | CH_cil_251 | 4 | 4 | 0.00000247548 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1360 | 4 | CH_cqu_497 | 3 | 3 | 0.000496531 |
| Davidia involucrata | GWHABJS00000085 | 4 | CH_din_17 | 9 | 9 | 5.34019e-20 |
| Davidia involucrata | GWHABJS00000085 | 4 | CH_din_18 | 9 | 9 | 5.34019e-20 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 4 | CH_eca_289 | 3 | 3 | 0.000103356 |
| Eucalyptus grandis | Chr07 | 4 | CH_egr_306 | 8 | 20 | 0.000000000252298 |
| Erythranthe guttata | scaffold_10 | 4 | CH_egut_104 | 5 | 5 | 0.00000000115171 |
| Helianthus annuus | HanXRQChr03 | 4 | CH_han_30 | 12 | 34 | 3.28936e-20 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_93 | 7 | 17 | 0.0000000000453478 |
| Quercus lobata | CM012294 | 4 | CH_qlo_452 | 5 | 8 | 0.000000191192 |
| Salvia bowleyana | GWHASIU00000002 | 4 | CH_sbo_46 | 10 | 23 | 5.52105e-18 |
| Selaginella moellendorffii | scaffold_42 | 4 | CH_smo_45 | 5 | 6 | 0.0000000820014 |
| Tripterygium wilfordii | NC_052254.1 | 4 | CH_twi_29 | 7 | 7 | 0.000000000000282219 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009862 | systemic acquired resistance, salicylic acid mediated signaling pathway | 12 |
| GO:0010112 | regulation of systemic acquired resistance | 38 |
| GO:1901672 | positive regulation of systemic acquired resistance | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |