Functional clusters
Information
- Type Gene Ontology
- Description defense response to virus
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR05 | 3 | CH_aox_247 | 3 | 3 | 0.000330161 |
| Aquilegia oxysepala | CHR01 | 3 | CH_aox_92 | 4 | 4 | 0.000000754699 |
| Amborella trichopoda | AmTr_v1.0_scaffold00030 | 3 | CH_atr_160 | 4 | 6 | 0.00000953916 |
| Amborella trichopoda | AmTr_v1.0_scaffold00065 | 3 | CH_atr_267 | 3 | 3 | 0.000292102 |
| Camellia sinensis var. sinensis | Chr7 | 3 | CH_camsi_154 | 7 | 27 | 0.00000000166904 |
| Camellia sinensis var. sinensis | Chr13 | 3 | CH_camsi_445 | 4 | 7 | 0.0000143821 |
| Cannabis sativa | NC_044379.1 | 3 | CH_cansat_113 | 5 | 9 | 0.000000112989 |
| Capsicum annuum | PGAv.1.6.scaffold243 | 3 | CH_can_234 | 4 | 7 | 0.00000660091 |
| Capsicum annuum | PGAv.1.6.scaffold574 | 3 | CH_can_330 | 3 | 3 | 0.000117523 |
| Capsicum annuum | PGAv.1.6.scaffold1245 | 3 | CH_can_409 | 3 | 4 | 0.000469503 |
| Cicer arietinum L. | Ca_LG3_v3 | 3 | CH_car_172 | 3 | 3 | 0.000343657 |
| Corylus avellana | 10 | 3 | CH_cav_301 | 4 | 11 | 0.000187085 |
| Carpinus fangiana | Cfa07 | 3 | CH_cfa_74 | 5 | 5 | 0.000000000780494 |
| Citrullus lanatus | CG_Chr10 | 3 | CH_cla_123 | 3 | 3 | 0.000260893 |
| Cucumis melo | chr04 | 3 | CH_cme_15 | 8 | 8 | 3.55287e-18 |
| Cucumis sativus L. | chr3 | 3 | CH_csa_44 | 6 | 6 | 0.00000000000264493 |
| Daucus carota | DCARv2_Chr6 | 3 | CH_dca_214 | 4 | 6 | 0.0000296992 |
| Durio zibethinus | NW_019167937.1 | 3 | CH_dzi_120 | 4 | 4 | 0.000000496998 |
| Eucalyptus grandis | Chr11 | 3 | CH_egr_433 | 5 | 6 | 0.0000000644692 |
| Erythranthe guttata | scaffold_10 | 3 | CH_egut_349 | 3 | 3 | 0.000258552 |
| Glycine max | Gm19 | 3 | CH_gma_208 | 4 | 4 | 0.00000139368 |
| Glycine max | Gm10 | 3 | CH_gma_236 | 4 | 5 | 0.00000695586 |
| Glycine max | Gm03 | 3 | CH_gma_38 | 7 | 7 | 0.0000000000000148711 |
| Glycine max | Gm07 | 3 | CH_gma_489 | 3 | 3 | 0.000622323 |
| Lupinus albus | Lalb_Chr02 | 3 | CH_lal_346 | 3 | 3 | 0.000352518 |
| Lotus japonicus | chr1 | 3 | CH_lja_139 | 4 | 4 | 0.0000012623 |
| Lotus japonicus | chr5 | 3 | CH_lja_236 | 4 | 8 | 0.0000876426 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 3 | CH_lsa_404 | 3 | 3 | 0.000198617 |
| Magnolia biondii | Chr17 | 3 | CH_mbi_49 | 12 | 63 | 0.00000000000000974129 |
| Medicago truncatula | chr7 | 3 | CH_mtr_187 | 6 | 12 | 0.000000000725811 |
| Medicago truncatula | chr1 | 3 | CH_mtr_603 | 4 | 13 | 0.000232633 |
| Nelumbo nucifera | chr6 | 3 | CH_nnu_33 | 7 | 13 | 0.00000000000365873 |
| Pisum sativum | chr3LG5 | 3 | CH_psa_138 | 4 | 5 | 0.00000153256 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_243 | 4 | 10 | 0.000063944 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_154 | 5 | 5 | 0.000000000553125 |
| Papaver somniferum | NC_039360.1 | 3 | CH_pso_572 | 3 | 3 | 0.000272387 |
| Populus trichocarpa | Chr03 | 3 | CH_ptr_95 | 6 | 6 | 0.00000000000548035 |
| Phaseolus vulgaris | Chr07 | 3 | CH_pvu_151 | 4 | 4 | 0.00000122426 |
| Phaseolus vulgaris | Chr01 | 3 | CH_pvu_85 | 5 | 5 | 0.00000000305863 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 3 | CH_rch_150 | 6 | 10 | 0.0000000000237327 |
| Salix brachista | GWHAAZH00000003 | 3 | CH_sbr_153 | 4 | 4 | 0.000000729417 |
| Salix brachista | GWHAAZH00000016 | 3 | CH_sbr_60 | 8 | 26 | 0.0000000000200107 |
| Sechium edule | LG02 | 3 | CH_sed_110 | 4 | 4 | 0.000000887222 |
| Sechium edule | LG12 | 3 | CH_sed_66 | 5 | 6 | 0.000000012131 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_462 | 3 | 3 | 0.000225723 |
| Solanum pennellii | Spenn-ch10 | 3 | CH_spe_142 | 4 | 4 | 0.000000167744 |
| Solanum tuberosum | ST4.03ch10 | 3 | CH_stu_218 | 4 | 4 | 0.000000309469 |
| Solanum tuberosum | ST4.03ch01 | 3 | CH_stu_493 | 3 | 3 | 0.000188708 |
| Trochodendron aralioides | group2 | 3 | CH_tar_81 | 5 | 5 | 0.00000000506487 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 3 | CH_tpr_131 | 4 | 5 | 0.00000338974 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 3 | CH_tpr_302 | 3 | 3 | 0.000309351 |
| Vigna mungo | CM024070.1 | 3 | CH_vmu_253 | 3 | 3 | 0.000225394 |
| Vanilla planifolia | CM028152.1 | 3 | CH_vpl_295 | 3 | 3 | 0.000410423 |
| Aquilegia oxysepala | CHR05 | 4 | CH_aox_247 | 3 | 3 | 0.000330161 |
| Aquilegia oxysepala | CHR01 | 4 | CH_aox_92 | 4 | 4 | 0.000000754699 |
| Amborella trichopoda | AmTr_v1.0_scaffold00030 | 4 | CH_atr_160 | 4 | 6 | 0.00000953916 |
| Amborella trichopoda | AmTr_v1.0_scaffold00065 | 4 | CH_atr_267 | 3 | 3 | 0.000292102 |
| Camellia sinensis var. sinensis | Chr7 | 4 | CH_camsi_154 | 7 | 27 | 0.00000000166904 |
| Camellia sinensis var. sinensis | Chr13 | 4 | CH_camsi_445 | 4 | 7 | 0.0000143821 |
| Cannabis sativa | NC_044379.1 | 4 | CH_cansat_113 | 5 | 9 | 0.000000112989 |
| Capsicum annuum | PGAv.1.6.scaffold243 | 4 | CH_can_234 | 4 | 7 | 0.00000660091 |
| Capsicum annuum | PGAv.1.6.scaffold574 | 4 | CH_can_330 | 3 | 3 | 0.000117523 |
| Capsicum annuum | PGAv.1.6.scaffold1245 | 4 | CH_can_409 | 3 | 4 | 0.000469503 |
| Cicer arietinum L. | Ca_LG3_v3 | 4 | CH_car_172 | 3 | 3 | 0.000343657 |
| Corylus avellana | 10 | 4 | CH_cav_301 | 4 | 11 | 0.000187085 |
| Carpinus fangiana | Cfa07 | 4 | CH_cfa_74 | 5 | 5 | 0.000000000780494 |
| Citrullus lanatus | CG_Chr10 | 4 | CH_cla_123 | 3 | 3 | 0.000260893 |
| Cucumis melo | chr04 | 4 | CH_cme_15 | 8 | 8 | 3.55287e-18 |
| Cucumis sativus L. | chr3 | 4 | CH_csa_44 | 6 | 6 | 0.00000000000264493 |
| Daucus carota | DCARv2_Chr6 | 4 | CH_dca_214 | 4 | 6 | 0.0000296992 |
| Durio zibethinus | NW_019167937.1 | 4 | CH_dzi_120 | 4 | 4 | 0.000000496998 |
| Eucalyptus grandis | Chr11 | 4 | CH_egr_433 | 5 | 6 | 0.0000000644692 |
| Erythranthe guttata | scaffold_10 | 4 | CH_egut_349 | 3 | 3 | 0.000258552 |
| Glycine max | Gm19 | 4 | CH_gma_208 | 4 | 4 | 0.00000139368 |
| Glycine max | Gm10 | 4 | CH_gma_236 | 4 | 5 | 0.00000695586 |
| Glycine max | Gm03 | 4 | CH_gma_38 | 7 | 7 | 0.0000000000000148711 |
| Glycine max | Gm07 | 4 | CH_gma_489 | 3 | 3 | 0.000622323 |
| Lupinus albus | Lalb_Chr02 | 4 | CH_lal_346 | 3 | 3 | 0.000352518 |
| Lotus japonicus | chr1 | 4 | CH_lja_139 | 4 | 4 | 0.0000012623 |
| Lotus japonicus | chr5 | 4 | CH_lja_236 | 4 | 8 | 0.0000876426 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 4 | CH_lsa_404 | 3 | 3 | 0.000198617 |
| Magnolia biondii | Chr17 | 4 | CH_mbi_49 | 12 | 63 | 0.00000000000000974129 |
| Medicago truncatula | chr7 | 4 | CH_mtr_187 | 6 | 12 | 0.000000000725811 |
| Medicago truncatula | chr1 | 4 | CH_mtr_603 | 4 | 13 | 0.000232633 |
| Nelumbo nucifera | chr6 | 4 | CH_nnu_33 | 7 | 13 | 0.00000000000365873 |
| Pisum sativum | chr3LG5 | 4 | CH_psa_138 | 4 | 5 | 0.00000153256 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_243 | 4 | 10 | 0.000063944 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_154 | 5 | 5 | 0.000000000553125 |
| Papaver somniferum | NC_039360.1 | 4 | CH_pso_572 | 3 | 3 | 0.000272387 |
| Populus trichocarpa | Chr03 | 4 | CH_ptr_95 | 6 | 6 | 0.00000000000548035 |
| Phaseolus vulgaris | Chr07 | 4 | CH_pvu_151 | 4 | 4 | 0.00000122426 |
| Phaseolus vulgaris | Chr01 | 4 | CH_pvu_85 | 5 | 5 | 0.00000000305863 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 4 | CH_rch_150 | 6 | 10 | 0.0000000000237327 |
| Salix brachista | GWHAAZH00000003 | 4 | CH_sbr_153 | 4 | 4 | 0.000000729417 |
| Salix brachista | GWHAAZH00000016 | 4 | CH_sbr_60 | 8 | 26 | 0.0000000000200107 |
| Sechium edule | LG02 | 4 | CH_sed_110 | 4 | 4 | 0.000000887222 |
| Sechium edule | LG12 | 4 | CH_sed_66 | 5 | 6 | 0.000000012131 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_462 | 3 | 3 | 0.000225723 |
| Solanum pennellii | Spenn-ch10 | 4 | CH_spe_142 | 4 | 4 | 0.000000167744 |
| Solanum tuberosum | ST4.03ch10 | 4 | CH_stu_218 | 4 | 4 | 0.000000309469 |
| Solanum tuberosum | ST4.03ch01 | 4 | CH_stu_493 | 3 | 3 | 0.000188708 |
| Trochodendron aralioides | group2 | 4 | CH_tar_81 | 5 | 5 | 0.00000000506487 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 4 | CH_tpr_131 | 4 | 5 | 0.00000338974 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 4 | CH_tpr_302 | 3 | 3 | 0.000309351 |
| Vigna mungo | CM024070.1 | 4 | CH_vmu_253 | 3 | 3 | 0.000225394 |
| Vanilla planifolia | CM028152.1 | 4 | CH_vpl_295 | 3 | 3 | 0.000410423 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0002230 | positive regulation of defense response to virus by host | 40 |
| GO:0009616 | RNAi-mediated antiviral immune response | 4 |
| GO:0050691 | regulation of defense response to virus by host | 2 |
| GO:0051214 | RNAi-mediated antiviral immunity against RNA virus | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |