Functional clusters
Information
- Type Gene Ontology
- Description jasmonic acid and ethylene-dependent systemic resistance
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 3 | CH_arhy_544 | 3 | 4 | 0.000183911 |
| Brassica carinata | ChrC08 | 3 | CH_bca_245 | 4 | 6 | 0.000000186322 |
| Brassica carinata | ChrB05 | 3 | CH_bca_306 | 4 | 8 | 0.000000868681 |
| Brassica napus | A07 | 3 | CH_bna_172 | 4 | 5 | 0.0000000467588 |
| Brassica napus | A02 | 3 | CH_bna_367 | 3 | 3 | 0.0000176852 |
| Brassica napus | C02 | 3 | CH_bna_368 | 3 | 3 | 0.0000176852 |
| Brassica napus | C06 | 3 | CH_bna_554 | 3 | 6 | 0.000353272 |
| Brassica oleracea | C2 | 3 | CH_bol_212 | 3 | 3 | 0.000010489 |
| Brassica rapa | A02 | 3 | CH_bra_148 | 3 | 3 | 0.0000150843 |
| Brassica rapa | A07 | 3 | CH_bra_176 | 3 | 4 | 0.0000603066 |
| Citrus clementina | scaffold_8 | 3 | CH_ccl_143 | 4 | 4 | 0.0000000290661 |
| Capsella rubella | scaffold_2 | 3 | CH_cru_17 | 7 | 7 | 2.45064e-17 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_15 | 7 | 12 | 7.93126e-16 |
| Eutrema salsugineum | scaffold_9 | 3 | CH_esa_62 | 4 | 4 | 0.000000027127 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_52 | 7 | 10 | 0.00000000000000666386 |
| Medicago truncatula | chr8 | 3 | CH_mtr_27 | 10 | 19 | 2.43757e-22 |
| Nicotiana tabacum | Nitab4.5_0000023 | 3 | CH_nta_63 | 3 | 3 | 0.0000147379 |
| Petunia axillaris | Peaxi162Scf00324 | 3 | CH_pax_69 | 4 | 5 | 0.0000000660469 |
| Physcomitrium patens | Chr16 | 3 | CH_ppa_227 | 4 | 24 | 0.000805226 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 4 | CH_arhy_544 | 3 | 4 | 0.000183911 |
| Brassica carinata | ChrC08 | 4 | CH_bca_245 | 4 | 6 | 0.000000186322 |
| Brassica carinata | ChrB05 | 4 | CH_bca_306 | 4 | 8 | 0.000000868681 |
| Brassica napus | A07 | 4 | CH_bna_172 | 4 | 5 | 0.0000000467588 |
| Brassica napus | A02 | 4 | CH_bna_367 | 3 | 3 | 0.0000176852 |
| Brassica napus | C02 | 4 | CH_bna_368 | 3 | 3 | 0.0000176852 |
| Brassica napus | C06 | 4 | CH_bna_554 | 3 | 6 | 0.000353272 |
| Brassica oleracea | C2 | 4 | CH_bol_212 | 3 | 3 | 0.000010489 |
| Brassica rapa | A02 | 4 | CH_bra_148 | 3 | 3 | 0.0000150843 |
| Brassica rapa | A07 | 4 | CH_bra_176 | 3 | 4 | 0.0000603066 |
| Citrus clementina | scaffold_8 | 4 | CH_ccl_143 | 4 | 4 | 0.0000000290661 |
| Capsella rubella | scaffold_2 | 4 | CH_cru_17 | 7 | 7 | 2.45064e-17 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_15 | 7 | 12 | 7.93126e-16 |
| Eutrema salsugineum | scaffold_9 | 4 | CH_esa_62 | 4 | 4 | 0.000000027127 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_52 | 7 | 10 | 0.00000000000000666386 |
| Medicago truncatula | chr8 | 4 | CH_mtr_27 | 10 | 19 | 2.43757e-22 |
| Nicotiana tabacum | Nitab4.5_0000023 | 4 | CH_nta_63 | 3 | 3 | 0.0000147379 |
| Petunia axillaris | Peaxi162Scf00324 | 4 | CH_pax_69 | 4 | 5 | 0.0000000660469 |
| Physcomitrium patens | Chr16 | 4 | CH_ppa_227 | 4 | 24 | 0.000805226 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009868 | jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |