Functional clusters
Information
- Type Gene Ontology
- Description innate immune response
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 3 | CH_aly_339 | 3 | 3 | 0.000820677 |
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_205 | 4 | 4 | 0.00000111303 |
| Brassica carinata | ChrC03 | 3 | CH_bca_525 | 4 | 8 | 0.0000509956 |
| Brassica carinata | ChrC01 | 3 | CH_bca_810 | 3 | 3 | 0.000442075 |
| Brassica carinata | ChrB02 | 3 | CH_bca_811 | 3 | 3 | 0.000442075 |
| Brassica napus | A06 | 3 | CH_bna_579 | 3 | 3 | 0.000408404 |
| Brassica napus | C03 | 3 | CH_bna_580 | 3 | 3 | 0.000408404 |
| Brassica oleracea | C3 | 3 | CH_bol_344 | 3 | 3 | 0.000385368 |
| Brassica rapa | A06 | 3 | CH_bra_289 | 3 | 3 | 0.000682621 |
| Cicer arietinum L. | Ca_LG2_v3 | 3 | CH_car_137 | 5 | 23 | 0.000199778 |
| Corylus avellana | 6 | 3 | CH_cav_37 | 8 | 11 | 0.000000000000282213 |
| Citrus clementina | scaffold_3 | 3 | CH_ccl_111 | 8 | 22 | 0.000000001866 |
| Cardamine hirsuta | Chr6 | 3 | CH_chi_389 | 3 | 3 | 0.000786445 |
| Carya illinoinensis | Chr12 | 3 | CH_cil_237 | 6 | 15 | 0.00000115842 |
| Carya illinoinensis | Chr11 | 3 | CH_cil_349 | 4 | 5 | 0.0000628861 |
| Capsella rubella | scaffold_8 | 3 | CH_cru_345 | 3 | 3 | 0.000942083 |
| Capsella rubella | scaffold_6 | 3 | CH_cru_346 | 3 | 3 | 0.000942083 |
| Davidia involucrata | GWHABJS00000017 | 3 | CH_din_161 | 7 | 47 | 0.00000211058 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_54 | 13 | 15 | 2.1701e-24 |
| Eutrema salsugineum | scaffold_2 | 3 | CH_esa_276 | 3 | 3 | 0.00079923 |
| Fragaria x ananassa | Fvb3-1 | 3 | CH_fan_343 | 6 | 39 | 0.0000488253 |
| Fragaria x ananassa | Fvb3-4 | 3 | CH_fan_56 | 9 | 41 | 0.0000000000602183 |
| Fragaria x ananassa | Fvb3-2 | 3 | CH_fan_95 | 7 | 21 | 0.00000000273327 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_372 | 5 | 29 | 0.00065446 |
| Lonicera japonica | GWHAAZE00000009 | 3 | CH_lonja_261 | 5 | 9 | 0.000000560483 |
| Malus domestica | Chr11 | 3 | CH_mdo_109 | 7 | 13 | 0.000000000284081 |
| Malus domestica | Chr00 | 3 | CH_mdo_263 | 8 | 57 | 0.000000751047 |
| Medicago truncatula | chr1 | 3 | CH_mtr_370 | 4 | 4 | 0.00000170933 |
| Nelumbo nucifera | chr1 | 3 | CH_nnu_163 | 4 | 6 | 0.0000212918 |
| Nelumbo nucifera | chr5 | 3 | CH_nnu_304 | 3 | 3 | 0.00059758 |
| Olea europaea | chr18 | 3 | CH_oeu_184 | 4 | 7 | 0.0000647989 |
| Olea europaea | chr18 | 3 | CH_oeu_19 | 7 | 9 | 0.00000000000112339 |
| Oryza sativa ssp. japonica | chr02 | 3 | CH_osa_14 | 13 | 33 | 5.48099e-21 |
| Petunia axillaris | Peaxi162Scf00365 | 3 | CH_pax_160 | 4 | 6 | 0.0000211215 |
| Prunus persica | Pp04 | 3 | CH_ppe_13 | 21 | 80 | 6.07126e-26 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_111 | 5 | 8 | 0.000000244794 |
| Phaseolus vulgaris | Chr03 | 3 | CH_pvu_219 | 4 | 6 | 0.0000496143 |
| Quercus lobata | 1 | 3 | CH_qlo_180 | 12 | 56 | 0.000000000000146791 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_12 | 21 | 78 | 3.97277e-31 |
| Schrenkiella parvula | ch6-6 | 3 | CH_spa_222 | 3 | 3 | 0.000985639 |
| Schrenkiella parvula | ch2-4 | 3 | CH_spa_223 | 3 | 3 | 0.000985639 |
| Solanum tuberosum | ST4.03ch03 | 3 | CH_stu_514 | 3 | 3 | 0.00029968 |
| Trochodendron aralioides | group14 | 3 | CH_tar_106 | 5 | 5 | 0.0000000290029 |
| Trochodendron aralioides | group12 | 3 | CH_tar_196 | 5 | 9 | 0.00000360807 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 3 | CH_tpr_2 | 15 | 26 | 1.34206e-26 |
| Vitis vinifera | chr10 | 3 | CH_vvi_189 | 4 | 4 | 0.00000198384 |
| Arabidopsis lyrata | scaffold_6 | 4 | CH_aly_339 | 3 | 3 | 0.000820677 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_205 | 4 | 4 | 0.00000111303 |
| Brassica carinata | ChrC03 | 4 | CH_bca_525 | 4 | 8 | 0.0000509956 |
| Brassica carinata | ChrC01 | 4 | CH_bca_810 | 3 | 3 | 0.000442075 |
| Brassica carinata | ChrB02 | 4 | CH_bca_811 | 3 | 3 | 0.000442075 |
| Brassica napus | A06 | 4 | CH_bna_579 | 3 | 3 | 0.000408404 |
| Brassica napus | C03 | 4 | CH_bna_580 | 3 | 3 | 0.000408404 |
| Brassica oleracea | C3 | 4 | CH_bol_344 | 3 | 3 | 0.000385368 |
| Brassica rapa | A06 | 4 | CH_bra_289 | 3 | 3 | 0.000682621 |
| Cicer arietinum L. | Ca_LG2_v3 | 4 | CH_car_137 | 5 | 23 | 0.000199778 |
| Corylus avellana | 6 | 4 | CH_cav_37 | 8 | 11 | 0.000000000000282213 |
| Citrus clementina | scaffold_3 | 4 | CH_ccl_111 | 8 | 22 | 0.000000001866 |
| Cardamine hirsuta | Chr6 | 4 | CH_chi_389 | 3 | 3 | 0.000786445 |
| Carya illinoinensis | Chr12 | 4 | CH_cil_237 | 6 | 15 | 0.00000115842 |
| Carya illinoinensis | Chr11 | 4 | CH_cil_349 | 4 | 5 | 0.0000628861 |
| Capsella rubella | scaffold_8 | 4 | CH_cru_345 | 3 | 3 | 0.000942083 |
| Capsella rubella | scaffold_6 | 4 | CH_cru_346 | 3 | 3 | 0.000942083 |
| Davidia involucrata | GWHABJS00000017 | 4 | CH_din_161 | 7 | 47 | 0.00000211058 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_54 | 13 | 15 | 2.1701e-24 |
| Eutrema salsugineum | scaffold_2 | 4 | CH_esa_276 | 3 | 3 | 0.00079923 |
| Fragaria x ananassa | Fvb3-1 | 4 | CH_fan_343 | 6 | 39 | 0.0000488253 |
| Fragaria x ananassa | Fvb3-4 | 4 | CH_fan_56 | 9 | 41 | 0.0000000000602183 |
| Fragaria x ananassa | Fvb3-2 | 4 | CH_fan_95 | 7 | 21 | 0.00000000273327 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_372 | 5 | 29 | 0.00065446 |
| Lonicera japonica | GWHAAZE00000009 | 4 | CH_lonja_261 | 5 | 9 | 0.000000560483 |
| Malus domestica | Chr11 | 4 | CH_mdo_109 | 7 | 13 | 0.000000000284081 |
| Malus domestica | Chr00 | 4 | CH_mdo_263 | 8 | 57 | 0.000000751047 |
| Medicago truncatula | chr1 | 4 | CH_mtr_370 | 4 | 4 | 0.00000170933 |
| Nelumbo nucifera | chr1 | 4 | CH_nnu_163 | 4 | 6 | 0.0000212918 |
| Nelumbo nucifera | chr5 | 4 | CH_nnu_304 | 3 | 3 | 0.00059758 |
| Olea europaea | chr18 | 4 | CH_oeu_184 | 4 | 7 | 0.0000647989 |
| Olea europaea | chr18 | 4 | CH_oeu_19 | 7 | 9 | 0.00000000000112339 |
| Oryza sativa ssp. japonica | chr02 | 4 | CH_osa_14 | 13 | 33 | 5.48099e-21 |
| Petunia axillaris | Peaxi162Scf00365 | 4 | CH_pax_160 | 4 | 6 | 0.0000211215 |
| Prunus persica | Pp04 | 4 | CH_ppe_13 | 21 | 80 | 6.07126e-26 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_111 | 5 | 8 | 0.000000244794 |
| Phaseolus vulgaris | Chr03 | 4 | CH_pvu_219 | 4 | 6 | 0.0000496143 |
| Quercus lobata | 1 | 4 | CH_qlo_180 | 12 | 56 | 0.000000000000146791 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_12 | 21 | 78 | 3.97277e-31 |
| Schrenkiella parvula | ch6-6 | 4 | CH_spa_222 | 3 | 3 | 0.000985639 |
| Schrenkiella parvula | ch2-4 | 4 | CH_spa_223 | 3 | 3 | 0.000985639 |
| Solanum tuberosum | ST4.03ch03 | 4 | CH_stu_514 | 3 | 3 | 0.00029968 |
| Trochodendron aralioides | group14 | 4 | CH_tar_106 | 5 | 5 | 0.0000000290029 |
| Trochodendron aralioides | group12 | 4 | CH_tar_196 | 5 | 9 | 0.00000360807 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 4 | CH_tpr_2 | 15 | 26 | 1.34206e-26 |
| Vitis vinifera | chr10 | 4 | CH_vvi_189 | 4 | 4 | 0.00000198384 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0002220 | innate immune response activating cell surface receptor signaling pathway | 16 |
| GO:0002752 | cell surface pattern recognition receptor signaling pathway | 4 |
| GO:0002758 | innate immune response-activating signal transduction | 30 |
| GO:0009616 | RNAi-mediated antiviral immune response | 4 |
| GO:0009626 | plant-type hypersensitive response | 18 |
| GO:0009682 | induced systemic resistance | 6 |
| GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway | 8 |
| GO:0009866 | induced systemic resistance, ethylene mediated signaling pathway | 8 |
| GO:0010363 | regulation of plant-type hypersensitive response | 2 |
| GO:0034051 | negative regulation of plant-type hypersensitive response | 2 |
| GO:0034052 | positive regulation of plant-type hypersensitive response | 2 |
| GO:0045088 | regulation of innate immune response | 4 |
| GO:0051214 | RNAi-mediated antiviral immunity against RNA virus | 4 |
| GO:0061760 | antifungal innate immune response | 2 |
| GO:0140426 | PAMP-triggered immunity signalling pathway | 2 |
| GO:1905034 | regulation of antifungal innate immune response | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |