Functional clusters
Information
- Type Gene Ontology
- Description defense response to Gram-negative bacterium
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR07 | 3 | CH_aox_149 | 3 | 3 | 0.0000250853 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 3 | CH_bvu_161 | 4 | 16 | 0.0000459022 |
| Camellia sinensis var. sinensis | Chr13 | 3 | CH_camsi_576 | 3 | 4 | 0.000134398 |
| Davidia involucrata | GWHABJS00000004 | 3 | CH_din_95 | 4 | 4 | 0.0000000342995 |
| Durio zibethinus | NW_019167982.1 | 3 | CH_dzi_10 | 8 | 8 | 3.12141e-20 |
| Glycine max | Gm01 | 3 | CH_gma_345 | 4 | 17 | 0.000141905 |
| Hydrangea macrophylla | Hma1.2p1_0661F.1 | 3 | CH_hma_132 | 3 | 4 | 0.0000716981 |
| Lupinus albus | Lalb_Chr04 | 3 | CH_lal_58 | 5 | 5 | 0.0000000000327661 |
| Manihot esculenta | Chromosome01 | 3 | CH_mes_119 | 5 | 5 | 0.000000000220973 |
| Manihot esculenta | Chromosome06 | 3 | CH_mes_297 | 3 | 3 | 0.000109627 |
| Manihot esculenta | Chromosome02 | 3 | CH_mes_50 | 7 | 7 | 4.07963e-16 |
| Populus trichocarpa | Chr12 | 3 | CH_ptr_127 | 5 | 6 | 0.00000000037612 |
| Quercus lobata | 6 | 3 | CH_qlo_909 | 3 | 4 | 0.000313183 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_288 | 6 | 6 | 0.00000000000171631 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_431 | 5 | 5 | 0.000000000952109 |
| Vitis vinifera | chr16 | 3 | CH_vvi_143 | 4 | 4 | 0.0000000691338 |
| Aquilegia oxysepala | CHR07 | 4 | CH_aox_149 | 3 | 3 | 0.0000250853 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 4 | CH_bvu_161 | 4 | 16 | 0.0000459022 |
| Camellia sinensis var. sinensis | Chr13 | 4 | CH_camsi_576 | 3 | 4 | 0.000134398 |
| Davidia involucrata | GWHABJS00000004 | 4 | CH_din_95 | 4 | 4 | 0.0000000342995 |
| Durio zibethinus | NW_019167982.1 | 4 | CH_dzi_10 | 8 | 8 | 3.12141e-20 |
| Glycine max | Gm01 | 4 | CH_gma_345 | 4 | 17 | 0.000141905 |
| Hydrangea macrophylla | Hma1.2p1_0661F.1 | 4 | CH_hma_132 | 3 | 4 | 0.0000716981 |
| Lupinus albus | Lalb_Chr04 | 4 | CH_lal_58 | 5 | 5 | 0.0000000000327661 |
| Manihot esculenta | Chromosome01 | 4 | CH_mes_119 | 5 | 5 | 0.000000000220973 |
| Manihot esculenta | Chromosome06 | 4 | CH_mes_297 | 3 | 3 | 0.000109627 |
| Manihot esculenta | Chromosome02 | 4 | CH_mes_50 | 7 | 7 | 4.07963e-16 |
| Populus trichocarpa | Chr12 | 4 | CH_ptr_127 | 5 | 6 | 0.00000000037612 |
| Quercus lobata | 6 | 4 | CH_qlo_909 | 3 | 4 | 0.000313183 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_288 | 6 | 6 | 0.00000000000171631 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_431 | 5 | 5 | 0.000000000952109 |
| Vitis vinifera | chr16 | 4 | CH_vvi_143 | 4 | 4 | 0.0000000691338 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |