Functional clusters
Information
- Type Gene Ontology
- Description respiratory burst involved in defense response
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr8 | 3 | CH_acertr_176 | 3 | 5 | 0.000000745369 |
Actinidia chinensis | Lachesis_group5 | 3 | CH_ach_239 | 2 | 2 | 0.000543213 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 3 | CH_arhy_672 | 2 | 2 | 0.000628705 |
Citrus clementina | scaffold_6 | 3 | CH_ccl_403 | 2 | 2 | 0.000492187 |
Carpinus fangiana | Cfa08 | 3 | CH_cfa_142 | 3 | 7 | 0.00000120423 |
Carica papaya | supercontig_104 | 3 | CH_cpa_240 | 2 | 2 | 0.000285198 |
Daucus carota | DCARv2_Chr6 | 3 | CH_dca_390 | 2 | 2 | 0.000637775 |
Davidia involucrata | GWHABJS00000021 | 3 | CH_din_375 | 2 | 2 | 0.000500125 |
Durio zibethinus | NW_019167937.1 | 3 | CH_dzi_308 | 2 | 2 | 0.000463489 |
Erigeron canadensis | Conyza_canadensis_scaffold:9 | 3 | CH_eca_424 | 2 | 2 | 0.000448722 |
Eucalyptus grandis | Chr11 | 3 | CH_egr_291 | 4 | 4 | 0.0000000000757894 |
Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_418 | 2 | 2 | 0.000185036 |
Gossypium raimondii | Chr06 | 3 | CH_gra_303 | 2 | 2 | 0.000321664 |
Lupinus albus | Lalb_Chr02 | 3 | CH_lal_412 | 2 | 2 | 0.000787236 |
Lonicera japonica | GWHAAZE00000001 | 3 | CH_lonja_243 | 3 | 3 | 0.000000301275 |
Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_244 | 3 | 3 | 0.000000301275 |
Lactuca sativa | Lsat_1_v8_lg_2 | 3 | CH_lsa_464 | 2 | 2 | 0.000514007 |
Magnolia biondii | Chr17 | 3 | CH_mbi_122 | 4 | 12 | 0.000000000850307 |
Nelumbo nucifera | chr2 | 3 | CH_nnu_316 | 2 | 2 | 0.000722526 |
Prunus persica | Pp07 | 3 | CH_ppe_435 | 2 | 2 | 0.000447577 |
Quercus lobata | 7 | 3 | CH_qlo_447 | 3 | 4 | 0.000000159926 |
Rhododendron simsii | chr03 | 3 | CH_rsi_41 | 7 | 13 | 3.51275e-19 |
Salix brachista | GWHAAZH00000016 | 3 | CH_sbr_261 | 3 | 23 | 0.00010532 |
Simmondsia chinensis | GWHAASQ00000012 | 3 | CH_sci_279 | 2 | 2 | 0.000851426 |
Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_160 | 3 | 3 | 0.000000103353 |
Trochodendron aralioides | group18 | 3 | CH_tar_153 | 3 | 3 | 0.000000454168 |
Theobroma cacao | Chromosome_5 | 3 | CH_tca_368 | 2 | 2 | 0.000439432 |
Tripterygium wilfordii | NC_052244.1 | 3 | CH_twi_312 | 2 | 2 | 0.00055788 |
Vigna mungo | CM024071.1 | 3 | CH_vmu_312 | 2 | 2 | 0.000646141 |
Acer truncatum | chr8 | 4 | CH_acertr_176 | 3 | 5 | 0.000000745369 |
Actinidia chinensis | Lachesis_group5 | 4 | CH_ach_239 | 2 | 2 | 0.000543213 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 4 | CH_arhy_672 | 2 | 2 | 0.000628705 |
Citrus clementina | scaffold_6 | 4 | CH_ccl_403 | 2 | 2 | 0.000492187 |
Carpinus fangiana | Cfa08 | 4 | CH_cfa_142 | 3 | 7 | 0.00000120423 |
Carica papaya | supercontig_104 | 4 | CH_cpa_240 | 2 | 2 | 0.000285198 |
Daucus carota | DCARv2_Chr6 | 4 | CH_dca_390 | 2 | 2 | 0.000637775 |
Davidia involucrata | GWHABJS00000021 | 4 | CH_din_375 | 2 | 2 | 0.000500125 |
Durio zibethinus | NW_019167937.1 | 4 | CH_dzi_308 | 2 | 2 | 0.000463489 |
Erigeron canadensis | Conyza_canadensis_scaffold:9 | 4 | CH_eca_424 | 2 | 2 | 0.000448722 |
Eucalyptus grandis | Chr11 | 4 | CH_egr_291 | 4 | 4 | 0.0000000000757894 |
Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_418 | 2 | 2 | 0.000185036 |
Gossypium raimondii | Chr06 | 4 | CH_gra_303 | 2 | 2 | 0.000321664 |
Lupinus albus | Lalb_Chr02 | 4 | CH_lal_412 | 2 | 2 | 0.000787236 |
Lonicera japonica | GWHAAZE00000001 | 4 | CH_lonja_243 | 3 | 3 | 0.000000301275 |
Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_244 | 3 | 3 | 0.000000301275 |
Lactuca sativa | Lsat_1_v8_lg_2 | 4 | CH_lsa_464 | 2 | 2 | 0.000514007 |
Magnolia biondii | Chr17 | 4 | CH_mbi_122 | 4 | 12 | 0.000000000850307 |
Nelumbo nucifera | chr2 | 4 | CH_nnu_316 | 2 | 2 | 0.000722526 |
Prunus persica | Pp07 | 4 | CH_ppe_435 | 2 | 2 | 0.000447577 |
Quercus lobata | 7 | 4 | CH_qlo_447 | 3 | 4 | 0.000000159926 |
Rhododendron simsii | chr03 | 4 | CH_rsi_41 | 7 | 13 | 3.51275e-19 |
Salix brachista | GWHAAZH00000016 | 4 | CH_sbr_261 | 3 | 23 | 0.00010532 |
Simmondsia chinensis | GWHAASQ00000012 | 4 | CH_sci_279 | 2 | 2 | 0.000851426 |
Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_160 | 3 | 3 | 0.000000103353 |
Trochodendron aralioides | group18 | 4 | CH_tar_153 | 3 | 3 | 0.000000454168 |
Theobroma cacao | Chromosome_5 | 4 | CH_tca_368 | 2 | 2 | 0.000439432 |
Tripterygium wilfordii | NC_052244.1 | 4 | CH_twi_312 | 2 | 2 | 0.00055788 |
Vigna mungo | CM024071.1 | 4 | CH_vmu_312 | 2 | 2 | 0.000646141 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |