Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 1 1 CH_cav_377 7 44 0.000236071
Chlamydomonas reinhardtii chromosome_8 1 CH_cre_52 3 4 0.000422907
Phaseolus vulgaris Chr02 1 CH_pvu_322 8 51 0.000159673
Corylus avellana 1 2 CH_cav_377 7 44 0.000236071
Chlamydomonas reinhardtii chromosome_8 2 CH_cre_52 3 4 0.000422907
Phaseolus vulgaris Chr02 2 CH_pvu_322 8 51 0.000159673

Available child term results

Ontology identifier Description Number of clusters
9.1 Secondary metabolism.terpenoids 24
9.1.1.1 Secondary metabolism.terpenoids.mevalonate pathway.acetyl-CoA C-acyltransferase 2
9.1.1.2 Secondary metabolism.terpenoids.mevalonate pathway.3-hydroxy-3-methylglutaryl-CoA synthase 12
9.1.1.3 Secondary metabolism.terpenoids.mevalonate pathway.3-hydroxy-3-methylglutaryl-CoA reductase 38
9.1.1.4 Secondary metabolism.terpenoids.mevalonate pathway.mevalonate kinase 2
9.1.1.5 Secondary metabolism.terpenoids.mevalonate pathway.phosphomevalonate kinase 6
9.1.1.6 Secondary metabolism.terpenoids.mevalonate pathway.mevalonate diphosphate decarboxylase 16
9.1.1.7 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase 7
9.1.2.1.1 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-d-xylulose 5-phosphate import.D-xylulose kinase 20
9.1.2.1.2 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-d-xylulose 5-phosphate import.D-xylulose 5-phosphate transporter 2
9.1.2.2 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-D-xylulose 5-phosphate synthase (DXS) 34
9.1.2.3 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-D-xylulose 5-phosphate reductase (DXR) 17
9.1.2.4 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol synthase 6
9.1.2.5 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2
9.1.2.7 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase 7
9.1.2.8 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase 34
9.1.3.1.1 Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.geranyl diphosphate synthase complex.catalytic subunit LSU/IDS11 3
9.1.3.2 Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.farnesyl diphosphate synthase 19
9.1.3.3 Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.isoprenyl diphosphate synthase (IDS) 46
9.1.4 Secondary metabolism.terpenoids.terpene biosynthesis 4
9.1.4.1 Secondary metabolism.terpenoids.terpene biosynthesis.isopentenyl phosphate kinase 4
9.1.4.2 Secondary metabolism.terpenoids.terpene biosynthesis.mono-/sesquiterpene-/diterpene synthase 484
9.1.4.3 Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase 193
9.1.5 Secondary metabolism.terpenoids.cycloartenol biosynthesis 2
9.1.5.1 Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene synthase 42
9.1.5.2 Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene epoxidase 86
9.1.5.3 Secondary metabolism.terpenoids.cycloartenol biosynthesis.cycloartenol synthase 8
9.1.6.1.1 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.phytoene synthase (PSY) 17
9.1.6.1.3 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.zeta-carotene isomerase (Z-ISO) 2
9.1.6.1.4 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.zeta-carotene desaturase (ZDS) 2
9.1.6.1.5 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.lycopene epsilon cyclase (LCY-e) 2
9.1.6.1.6 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.lycopene beta cyclase (LCY-b) 11
9.1.6.2 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls 2
9.1.6.2.1.1 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.carotenoid hydroxylase activities.carotenoid beta-ring hydroxylase (BCH) 8
9.1.6.2.4 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.neoxanthin synthase (ABA4) 5
9.1.6.2.5 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.neoxanthin biosynthesis cofactor (NXD1) 8
9.1.6.3.1 Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.class-CCD1 carotenoid cleavage dioxygenase 41
9.1.6.3.2 Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.class-CCD4 carotenoid cleavage dioxygenase 43
9.1.6.3.3 Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.zaxinone synthase (ZAS) 71
9.2 Secondary metabolism.phenolics 10
9.2.1 Secondary metabolism.phenolics.p-coumaroyl-CoA biosynthesis 1
9.2.1.1.1 Secondary metabolism.phenolics.p-coumaroyl-CoA biosynthesis.phenylalanine ammonia lyase activity.phenylalanine ammonia lyase (PAL) 74
9.2.1.1.2 Secondary metabolism.phenolics.p-coumaroyl-CoA biosynthesis.phenylalanine ammonia lyase activity.substrate adaptor of regulatory SCF ubiquitin ligase (KFB-PAL) 44
9.2.1.1.3 Secondary metabolism.phenolics.p-coumaroyl-CoA biosynthesis.phenylalanine ammonia lyase activity.substrate adaptor of regulatory SCF ubiquitin ligase (SAGL1) 4
9.2.1.2 Secondary metabolism.phenolics.p-coumaroyl-CoA biosynthesis.cinnamate 4-hydroxylase (C4H) 26
9.2.2 Secondary metabolism.phenolics.flavonoid biosynthesis 4
9.2.2.1.1 Secondary metabolism.phenolics.flavonoid biosynthesis.polyketide/acetate pathway.enoyl-CoA hydratase (ECH) 5
9.2.2.1.2 Secondary metabolism.phenolics.flavonoid biosynthesis.polyketide/acetate pathway.hydroxyacyl-CoA dehydrogenase (HCD) 5
9.2.2.1.3 Secondary metabolism.phenolics.flavonoid biosynthesis.polyketide/acetate pathway.3-ketoacyl-CoA thiolase (KAT) 2
9.2.2.1.4 Secondary metabolism.phenolics.flavonoid biosynthesis.polyketide/acetate pathway.acetyl-CoA carboxylase (ACC) 9
9.2.2.10.1 Secondary metabolism.phenolics.flavonoid biosynthesis.anthocyanidins.dihydroflavonol 4-reductase 31
9.2.2.10.2 Secondary metabolism.phenolics.flavonoid biosynthesis.anthocyanidins.anthocyanidin synthase 8
9.2.2.10.3 Secondary metabolism.phenolics.flavonoid biosynthesis.anthocyanidins.anthocyanidin reductase 8
9.2.2.10.4 Secondary metabolism.phenolics.flavonoid biosynthesis.anthocyanidins.leucoanthocyanidin reductase 3
9.2.2.2.1.1 Secondary metabolism.phenolics.flavonoid biosynthesis.chalcones.chalcone synthase activity.chalcone synthase (CHS) 97
9.2.2.2.1.2 Secondary metabolism.phenolics.flavonoid biosynthesis.chalcones.chalcone synthase activity.regulatory substrate adaptor of SCF ubiquitin ligase (KFB-CHS) 17
9.2.2.3.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavanones.chalcone isomerase 48
9.2.2.4.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavones.type-I flavone synthase 7
9.2.2.4.2 Secondary metabolism.phenolics.flavonoid biosynthesis.flavones.type-II flavone synthase 11
9.2.2.5.1 Secondary metabolism.phenolics.flavonoid biosynthesis.dihydroflavonols.flavonoid 3'-hydroxylase 17
9.2.2.5.2 Secondary metabolism.phenolics.flavonoid biosynthesis.dihydroflavonols.flavonoid 3',5'-hydroxylase 2
9.2.2.5.3 Secondary metabolism.phenolics.flavonoid biosynthesis.dihydroflavonols.flavanone 3-hydroxylase 22
9.2.2.6.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonols.flavonol synthase 80
9.2.2.7 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides 4
9.2.2.7.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides.flavonol 3-O-glycosyltransferase 135
9.2.2.7.2 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides.flavonol-3-O-rhamnosyltransferase 73
9.2.2.7.3 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides.flavonol-3-O-glycoside rhamnosyltransferase 72
9.2.2.8.1 Secondary metabolism.phenolics.flavonoid biosynthesis.aurones.aureusidin synthase 147
9.2.2.9.1 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone synthase 54
9.2.2.9.2 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.2-hydroxyisoflavanone dehydratase 53
9.2.2.9.3 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone 2'-hydroxylase 10
9.2.2.9.4 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone-7-O-methyltransferase 14
9.2.2.9.5 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone reductase 5
9.2.3.1 Secondary metabolism.phenolics.coumarin biosynthesis.coumarin synthase (COSY) 1
9.3.1.1 Secondary metabolism.betaines.glycinebetaine biosynthesis.choline monooxygenase 8
9.3.1.2 Secondary metabolism.betaines.glycinebetaine biosynthesis.betaine-aldehyde dehydrogenase 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001