Functional clusters
Information
- Type MapMan
- Description Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides.flavonol-3-O-rhamnosyltransferase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_116 | 3 | 4 | 0.000000104555 |
| Aquilegia oxysepala | CHR07 | 1 | CH_aox_163 | 2 | 2 | 0.0000801989 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_103 | 3 | 4 | 0.0000000196984 |
| Brassica carinata | Contig74 | 1 | CH_bca_1033 | 2 | 5 | 0.000641259 |
| Camellia sinensis var. sinensis | Chr2 | 1 | CH_camsi_133 | 4 | 8 | 0.000000000101228 |
| Cicer arietinum L. | Ca_LG7_v3 | 1 | CH_car_310 | 2 | 2 | 0.000778301 |
| Corylus avellana | 9 | 1 | CH_cav_481 | 2 | 2 | 0.000766695 |
| Coffea canephora | chr6 | 1 | CH_ccan_70 | 3 | 19 | 0.0000000263631 |
| Carpinus fangiana | Cfa02 | 1 | CH_cfa_105 | 3 | 4 | 0.000000137654 |
| Cardamine hirsuta | Chr6 | 1 | CH_chi_88 | 3 | 3 | 0.0000000071667 |
| Carya illinoinensis | Chr04 | 1 | CH_cil_19 | 8 | 8 | 1.828e-25 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2933 | 1 | CH_cqu_61 | 4 | 5 | 0.0000000000239348 |
| Gossypium hirsutum | D04 | 1 | CH_ghi_258 | 3 | 3 | 0.000000176463 |
| Glycine max | Gm07 | 1 | CH_gma_155 | 3 | 3 | 0.0000000756348 |
| Gossypium raimondii | Chr12 | 1 | CH_gra_136 | 3 | 3 | 0.000000150895 |
| Helianthus annuus | HanXRQChr08 | 1 | CH_han_312 | 3 | 6 | 0.0000015676 |
| Lonicera japonica | GWHAAZE00000009 | 1 | CH_lonja_586 | 2 | 3 | 0.00053896 |
| Malus domestica | Chr16 | 1 | CH_mdo_687 | 2 | 2 | 0.000568817 |
| Medicago truncatula | chr4 | 1 | CH_mtr_584 | 2 | 3 | 0.000123256 |
| Nelumbo nucifera | chr7 | 1 | CH_nnu_32 | 5 | 10 | 0.000000000000382425 |
| Prunus persica | Pp01 | 1 | CH_ppe_119 | 4 | 8 | 0.000000000435785 |
| Papaver somniferum | NC_039361.1 | 1 | CH_pso_212 | 3 | 3 | 0.0000000426135 |
| Papaver somniferum | NC_039362.1 | 1 | CH_pso_262 | 3 | 4 | 0.000000170445 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_125 | 4 | 7 | 0.00000000255385 |
| Phaseolus vulgaris | Chr02 | 1 | CH_pvu_131 | 3 | 3 | 0.0000000809765 |
| Quercus lobata | 11 | 1 | CH_qlo_471 | 3 | 4 | 0.000000559721 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_273 | 4 | 25 | 0.000000168018 |
| Rhododendron simsii | chr09 | 1 | CH_rsi_560 | 2 | 2 | 0.000645307 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_74 | 8 | 18 | 8.07756e-23 |
| Selenicereus undatus | Scaffold_10417 | 1 | CH_sun_129 | 2 | 2 | 0.0000726639 |
| Trochodendron aralioides | group10 | 1 | CH_tar_56 | 5 | 57 | 0.000000000407404 |
| Theobroma cacao | Chromosome_5 | 1 | CH_tca_398 | 2 | 2 | 0.000439432 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_126 | 3 | 3 | 0.00000045335 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_161 | 3 | 5 | 0.00000453182 |
| Vitis vinifera | chr6 | 1 | CH_vvi_197 | 3 | 4 | 0.00000121483 |
| Vitis vinifera | chr11 | 1 | CH_vvi_208 | 3 | 5 | 0.00000303662 |
| Arabidopsis lyrata | scaffold_6 | 2 | CH_aly_116 | 3 | 4 | 0.000000104555 |
| Aquilegia oxysepala | CHR07 | 2 | CH_aox_163 | 2 | 2 | 0.0000801989 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_103 | 3 | 4 | 0.0000000196984 |
| Brassica carinata | Contig74 | 2 | CH_bca_1033 | 2 | 5 | 0.000641259 |
| Camellia sinensis var. sinensis | Chr2 | 2 | CH_camsi_133 | 4 | 8 | 0.000000000101228 |
| Cicer arietinum L. | Ca_LG7_v3 | 2 | CH_car_310 | 2 | 2 | 0.000778301 |
| Corylus avellana | 9 | 2 | CH_cav_481 | 2 | 2 | 0.000766695 |
| Coffea canephora | chr6 | 2 | CH_ccan_70 | 3 | 19 | 0.0000000263631 |
| Carpinus fangiana | Cfa02 | 2 | CH_cfa_105 | 3 | 4 | 0.000000137654 |
| Cardamine hirsuta | Chr6 | 2 | CH_chi_88 | 3 | 3 | 0.0000000071667 |
| Carya illinoinensis | Chr04 | 2 | CH_cil_19 | 8 | 8 | 1.828e-25 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2933 | 2 | CH_cqu_61 | 4 | 5 | 0.0000000000239348 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_362 | 4 | 5 | 0.00000000919972 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_608 | 3 | 4 | 0.0000167655 |
| Gossypium hirsutum | D04 | 2 | CH_ghi_258 | 3 | 3 | 0.000000176463 |
| Glycine max | Gm07 | 2 | CH_gma_155 | 3 | 3 | 0.0000000756348 |
| Gossypium raimondii | Chr12 | 2 | CH_gra_136 | 3 | 3 | 0.000000150895 |
| Helianthus annuus | HanXRQChr08 | 2 | CH_han_312 | 3 | 6 | 0.0000015676 |
| Lonicera japonica | GWHAAZE00000009 | 2 | CH_lonja_586 | 2 | 3 | 0.00053896 |
| Malus domestica | Chr16 | 2 | CH_mdo_687 | 2 | 2 | 0.000568817 |
| Nelumbo nucifera | chr7 | 2 | CH_nnu_32 | 5 | 10 | 0.000000000000382425 |
| Prunus persica | Pp01 | 2 | CH_ppe_119 | 4 | 8 | 0.000000000435785 |
| Papaver somniferum | NC_039361.1 | 2 | CH_pso_212 | 3 | 3 | 0.0000000426135 |
| Papaver somniferum | NC_039362.1 | 2 | CH_pso_262 | 3 | 4 | 0.000000170445 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_125 | 4 | 7 | 0.00000000255385 |
| Phaseolus vulgaris | Chr02 | 2 | CH_pvu_131 | 3 | 3 | 0.0000000809765 |
| Quercus lobata | 11 | 2 | CH_qlo_471 | 3 | 4 | 0.000000559721 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_273 | 4 | 25 | 0.000000168018 |
| Rhododendron simsii | chr09 | 2 | CH_rsi_560 | 2 | 2 | 0.000645307 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_74 | 8 | 18 | 8.07756e-23 |
| Selenicereus undatus | Scaffold_10417 | 2 | CH_sun_129 | 2 | 2 | 0.0000726639 |
| Trochodendron aralioides | group10 | 2 | CH_tar_56 | 5 | 57 | 0.000000000407404 |
| Theobroma cacao | Chromosome_5 | 2 | CH_tca_398 | 2 | 2 | 0.000439432 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_126 | 3 | 3 | 0.00000045335 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_161 | 3 | 5 | 0.00000453182 |
| Vitis vinifera | chr6 | 2 | CH_vvi_197 | 3 | 4 | 0.00000121483 |
| Vitis vinifera | chr11 | 2 | CH_vvi_208 | 3 | 5 | 0.00000303662 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |