Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 1 CH_acertr_222 3 17 0.0000202601
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_89 5 7 0.0000000000001002
Amborella trichopoda AmTr_v1.0_scaffold00022 1 CH_atr_279 2 4 0.000476607
Cannabis sativa NC_044372.1 1 CH_cansat_46 6 61 0.00000000000149133
Capsicum annuum PGAv.1.6.scaffold394 1 CH_can_281 2 2 0.0000826105
Citrus clementina scaffold_4 1 CH_ccl_40 5 6 0.0000000000000427962
Carica papaya supercontig_85 1 CH_cpa_278 2 3 0.000285185
Daucus carota DCARv2_Chr6 1 CH_dca_364 2 2 0.000382665
Durio zibethinus NW_019167937.1 1 CH_dzi_287 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_213 3 4 0.00000549579
Glycine max Gm03 1 CH_gma_404 3 17 0.000176045
Gossypium raimondii Chr02 1 CH_gra_356 2 2 0.000321664
Helianthus annuus HanXRQChr10 1 CH_han_340 3 8 0.0000043886
Lotus japonicus chr5 1 CH_lja_31 5 5 0.0000000000000247137
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_85 4 5 0.0000000000305558
Magnolia biondii Chr01 1 CH_mbi_12 7 20 8.01095e-20
Malus domestica Chr11 1 CH_mdo_617 2 3 0.00034128
Nelumbo nucifera chr7 1 CH_nnu_66 3 3 0.0000000028517
Prunus persica Pp07 1 CH_ppe_243 3 6 0.00000333767
Phaseolus vulgaris Chr07 1 CH_pvu_143 3 3 0.000000161953
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_774 2 4 0.000717527
Sequoiadendron giganteum chr5 1 CH_sgi_1233 2 2 0.000292291
Sequoiadendron giganteum chr6 1 CH_sgi_1234 2 3 0.000292291
Theobroma cacao Chromosome_5 1 CH_tca_153 3 4 0.00000012873
Vigna mungo CM024071.1 1 CH_vmu_422 2 2 0.000969211
Vigna mungo CM024070.1 1 CH_vmu_423 2 2 0.000969211
Acer truncatum chr6 2 CH_acertr_222 3 17 0.0000202601
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_89 5 7 0.0000000000001002
Amborella trichopoda AmTr_v1.0_scaffold00022 2 CH_atr_279 2 4 0.000476607
Cannabis sativa NC_044372.1 2 CH_cansat_46 6 61 0.00000000000149133
Capsicum annuum PGAv.1.6.scaffold394 2 CH_can_281 2 2 0.0000826105
Citrus clementina scaffold_4 2 CH_ccl_40 5 6 0.0000000000000427962
Carica papaya supercontig_85 2 CH_cpa_278 2 3 0.000285185
Daucus carota DCARv2_Chr6 2 CH_dca_364 2 2 0.000382665
Durio zibethinus NW_019167937.1 2 CH_dzi_287 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_213 3 4 0.00000549579
Gossypium hirsutum A01 2 CH_ghi_833 2 2 0.000747644
Gossypium hirsutum D01 2 CH_ghi_834 2 2 0.000747644
Glycine max Gm03 2 CH_gma_404 3 17 0.000176045
Gossypium raimondii Chr02 2 CH_gra_356 2 2 0.000321664
Helianthus annuus HanXRQChr10 2 CH_han_340 3 8 0.0000043886
Lotus japonicus chr5 2 CH_lja_31 5 5 0.0000000000000247137
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_85 4 5 0.0000000000305558
Magnolia biondii Chr01 2 CH_mbi_12 7 20 8.01095e-20
Malus domestica Chr11 2 CH_mdo_617 2 3 0.00034128
Nelumbo nucifera chr7 2 CH_nnu_66 3 3 0.0000000028517
Prunus persica Pp07 2 CH_ppe_243 3 6 0.00000333767
Phaseolus vulgaris Chr07 2 CH_pvu_143 3 3 0.000000161953
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_774 2 4 0.000717527
Sequoiadendron giganteum chr5 2 CH_sgi_1233 2 2 0.000292291
Sequoiadendron giganteum chr6 2 CH_sgi_1234 2 3 0.000292291
Theobroma cacao Chromosome_5 2 CH_tca_153 3 4 0.00000012873
Vigna mungo CM024071.1 2 CH_vmu_422 2 2 0.000969211
Vigna mungo CM024070.1 2 CH_vmu_423 2 2 0.000969211

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001