Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.phenolics.p-coumaroyl-CoA biosynthesis.phenylalanine ammonia lyase activity.substrate adaptor of regulatory SCF ubiquitin ligase (KFB-PAL)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group1 1 CH_ach_143 2 2 0.000162964
Camellia sinensis var. sinensis Chr15 1 CH_camsi_827 2 2 0.000458547
Capsicum annuum PGAv.1.6.scaffold438 1 CH_can_405 2 2 0.000495663
Carya illinoinensis Chr01 1 CH_cil_536 2 2 0.000619828
Durio zibethinus NW_019167982.1 1 CH_dzi_404 2 2 0.000973326
Eucalyptus grandis Chr10 1 CH_egr_248 4 4 0.0000000000210526
Fragaria vesca Fvb6 1 CH_fve_402 2 2 0.000353461
Petunia axillaris Peaxi162Scf00015 1 CH_pax_354 2 2 0.000703556
Punica granatum NC_045129.1 1 CH_pgr_107 3 3 0.0000000844584
Papaver somniferum NC_039364.1 1 CH_pso_147 4 9 0.0000000014248
Papaver somniferum NC_039365.1 1 CH_pso_80 5 10 0.000000000000224654
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_788 2 3 0.000717541
Rhododendron simsii chr12 1 CH_rsi_127 4 7 0.00000000197448
Sequoiadendron giganteum chr7 1 CH_sgi_225 4 4 0.000000000000346852
Solanum lycopersicum SL4.0ch03 1 CH_sly_479 2 2 0.000352164
Solanum pennellii Spenn-ch03 1 CH_spe_436 2 2 0.000266874
Solanum tuberosum ST4.03ch06 1 CH_stu_166 3 3 0.0000000787843
Solanum tuberosum ST4.03ch03 1 CH_stu_606 2 2 0.000768679
Theobroma cacao Chromosome_6 1 CH_tca_397 2 2 0.000439432
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_430 2 2 0.000929238
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_431 2 2 0.000929238
Vanilla planifolia CM028150.1 1 CH_vpl_326 2 2 0.000443328
Actinidia chinensis Lachesis_group1 2 CH_ach_143 2 2 0.000162964
Camellia sinensis var. sinensis Chr15 2 CH_camsi_827 2 2 0.000458547
Capsicum annuum PGAv.1.6.scaffold438 2 CH_can_405 2 2 0.000495663
Carya illinoinensis Chr01 2 CH_cil_536 2 2 0.000619828
Durio zibethinus NW_019167982.1 2 CH_dzi_404 2 2 0.000973326
Eucalyptus grandis Chr10 2 CH_egr_248 4 4 0.0000000000210526
Fragaria vesca Fvb6 2 CH_fve_402 2 2 0.000353461
Petunia axillaris Peaxi162Scf00015 2 CH_pax_354 2 2 0.000703556
Punica granatum NC_045129.1 2 CH_pgr_107 3 3 0.0000000844584
Papaver somniferum NC_039364.1 2 CH_pso_147 4 9 0.0000000014248
Papaver somniferum NC_039365.1 2 CH_pso_80 5 10 0.000000000000224654
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_788 2 3 0.000717541
Rhododendron simsii chr12 2 CH_rsi_127 4 7 0.00000000197448
Sequoiadendron giganteum chr7 2 CH_sgi_225 4 4 0.000000000000346852
Solanum lycopersicum SL4.0ch03 2 CH_sly_479 2 2 0.000352164
Solanum pennellii Spenn-ch03 2 CH_spe_436 2 2 0.000266874
Solanum tuberosum ST4.03ch06 2 CH_stu_166 3 3 0.0000000787843
Solanum tuberosum ST4.03ch03 2 CH_stu_606 2 2 0.000768679
Theobroma cacao Chromosome_6 2 CH_tca_397 2 2 0.000439432
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_430 2 2 0.000929238
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_431 2 2 0.000929238
Vanilla planifolia CM028150.1 2 CH_vpl_326 2 2 0.000443328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001