Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 1 CH_aar_170 4 49 0.000100174
Actinidia chinensis Lachesis_group25 1 CH_ach_54 3 4 0.00000148702
Arabidopsis lyrata scaffold_2 1 CH_aly_37 7 58 0.0000000000124276
Avicennia marina ScioBoG_102840_HRSCAF_103099 1 CH_ama_36 3 3 0.00000245339
Aquilegia oxysepala CHR01 1 CH_aox_107 3 4 0.00000636601
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_13 11 22 3.40886e-28
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_29 9 17 1.53339e-22
Arabidopsis thaliana Chr1 1 CH_ath_61 4 5 0.000000000353041
Brassica oleracea C5 1 CH_bol_288 3 15 0.00012015
Camellia sinensis var. sinensis Chr8 1 CH_camsi_13 11 38 3.22289e-25
Camellia sinensis var. sinensis Chr10 1 CH_camsi_508 3 5 0.0000359336
Cannabis sativa NC_044375.1 1 CH_cansat_177 3 4 0.000017586
Cannabis sativa NC_044373.1 1 CH_cansat_199 4 28 0.0000410249
Capsicum annuum PGAv.1.6.scaffold594 1 CH_can_5 10 16 1.01829e-29
Cicer arietinum L. Ca_LG8_v3 1 CH_car_21 5 36 0.0000000057868
Corylus avellana 7 1 CH_cav_309 3 9 0.000211421
Chara braunii BFEA01000197 1 CH_cbr_73 2 2 0.0000719269
Coffea canephora chr0 1 CH_ccan_337 3 70 0.000600628
Citrus clementina scaffold_4 1 CH_ccl_36 6 7 0.00000000000000100402
Cardamine hirsuta Chr2 1 CH_chi_102 4 8 0.0000000228666
Carya illinoinensis Chr16 1 CH_cil_123 5 7 0.000000000047272
Carya illinoinensis Chr02 1 CH_cil_297 3 3 0.00000766477
Carya illinoinensis Chr01 1 CH_cil_51 7 11 1.71154e-16
Carya illinoinensis Chr15 1 CH_cil_73 6 8 0.0000000000000312587
Cucumis melo chr09 1 CH_cme_74 4 9 0.0000000235467
Carica papaya supercontig_91 1 CH_cpa_255 3 16 0.000265061
Chenopodium quinoa C_Quinoa_Scaffold_2716 1 CH_cqu_117 4 5 0.00000000954729
Chenopodium quinoa C_Quinoa_Scaffold_2487 1 CH_cqu_156 4 8 0.000000133523
Chenopodium quinoa C_Quinoa_Scaffold_3966 1 CH_cqu_390 3 7 0.00015655
Chenopodium quinoa C_Quinoa_Scaffold_1677 1 CH_cqu_55 5 6 0.00000000000461454
Capsella rubella scaffold_2 1 CH_cru_175 3 4 0.00000112251
Cucumis sativus L. chr5 1 CH_csa_168 3 4 0.0000119537
Cucumis sativus L. chr2 1 CH_csa_31 6 9 0.0000000000000131397
Davidia involucrata GWHABJS00000017 1 CH_din_174 3 3 0.0000021011
Davidia involucrata GWHABJS00000016 1 CH_din_218 3 5 0.0000209997
Davidia involucrata GWHABJS00000001 1 CH_din_276 3 7 0.0000734596
Davidia involucrata GWHABJS00000003 1 CH_din_74 4 5 0.00000000341441
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_240 3 7 0.0000232405
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_299 3 9 0.0000557577
Eucalyptus grandis Chr06 1 CH_egr_57 9 11 5.33972e-24
Fragaria x ananassa Fvb6-3 1 CH_fan_100 4 6 0.000000011661
Fragaria x ananassa Fvb6-1 1 CH_fan_110 4 7 0.0000000272029
Fragaria x ananassa Fvb6-2 1 CH_fan_499 3 10 0.00033574
Fragaria x ananassa Fvb6-4 1 CH_fan_55 6 38 0.000000000148181
Fragaria vesca Fvb6 1 CH_fve_127 4 11 0.0000000424565
Gossypium hirsutum D06 1 CH_ghi_146 4 5 0.000000000417795
Gossypium raimondii Chr10 1 CH_gra_97 4 6 0.0000000042056
Hydrangea macrophylla Hma1.2p1_0286F.1 1 CH_hma_71 4 17 0.000000683178
Lupinus albus Lalb_Chr22 1 CH_lal_96 3 4 0.000000330509
Lotus japonicus chr3 1 CH_lja_164 4 17 0.000000858984
Lotus japonicus chr2 1 CH_lja_40 5 6 0.000000000000543584
Lonicera japonica GWHAAZE00000002 1 CH_lonja_281 3 3 0.00000439001
Magnolia biondii Chr13 1 CH_mbi_189 3 5 0.000000353765
Malus domestica Chr09 1 CH_mdo_521 3 7 0.000173413
Malus domestica Chr17 1 CH_mdo_56 7 24 0.0000000000000387614
Malus domestica Chr17 1 CH_mdo_87 5 7 0.0000000000172944
Medicago truncatula chr8 1 CH_mtr_212 4 6 0.00000000425882
Nelumbo nucifera chr8 1 CH_nnu_63 5 30 0.00000000177902
Oryza sativa ssp. japonica chr02 1 CH_osa_74 4 9 0.0000000116847
Punica granatum NC_045134.1 1 CH_pgr_71 5 24 0.00000000126966
Prunus persica Pp03 1 CH_ppe_26 8 12 9.92167e-22
Pisum sativum chr1LG6 1 CH_psa_76 4 13 0.0000000106484
Papaver somniferum NC_039364.1 1 CH_pso_143 4 7 0.00000000120061
Populus trichocarpa Chr14 1 CH_ptr_237 3 3 0.0000022802
Populus trichocarpa Chr07 1 CH_ptr_289 3 6 0.0000455645
Phaseolus vulgaris Chr04 1 CH_pvu_225 3 4 0.0000117862
Phaseolus vulgaris Chr06 1 CH_pvu_25 7 10 5.10074e-18
Quercus lobata 5 1 CH_qlo_147 9 56 0.0000000000000524252
Quercus lobata 11 1 CH_qlo_30 12 27 2.34019e-26
Quercus lobata 5 1 CH_qlo_545 4 10 0.00000452185
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_14 14 54 3.19006e-30
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_178 5 11 0.00000000124403
Rhododendron simsii chr03 1 CH_rsi_226 3 7 0.000000874315
Salvia bowleyana GWHASIU00000002 1 CH_sbo_213 3 5 0.00000372514
Salix brachista GWHAAZH00000007 1 CH_sbr_189 3 4 0.0000133377
Salix brachista GWHAAZH00000018 1 CH_sbr_96 6 71 0.0000000251481
Simmondsia chinensis GWHAASQ00000006 1 CH_sci_233 2 4 0.000255428
Sechium edule LG03 1 CH_sed_104 3 3 0.000000641322
Solanum lycopersicum SL4.0ch12 1 CH_sly_161 3 3 0.000000103353
Selaginella moellendorffii scaffold_98 1 CH_smo_152 2 2 0.000560224
Schrenkiella parvula ch5-7 1 CH_spa_97 3 3 0.000000185978
Solanum pennellii Spenn-ch12 1 CH_spe_169 3 4 0.000000415433
Solanum tuberosum ST4.03ch12 1 CH_stu_115 4 9 0.00000000177978
Selenicereus undatus Scaffold_33675 1 CH_sun_2 11 30 1.19095e-26
Selenicereus undatus Scaffold_19641 1 CH_sun_70 3 3 0.00000360376
Trochodendron aralioides group10 1 CH_tar_17 7 30 0.0000000000000128328
Theobroma cacao Chromosome_6 1 CH_tca_240 3 6 0.0000135093
Tarenaya hassleriana NW_010964598.1 1 CH_tha_23 4 4 0.000000000337384
Tripterygium wilfordii NC_052232.1 1 CH_twi_194 3 6 0.0000912723
Utricularia gibba unitig_748 1 CH_ugi_19 4 11 0.0000000274442
Utricularia gibba unitig_578 1 CH_ugi_97 3 6 0.00000906129
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_291 3 10 0.000186142
Vigna mungo CM024077.1 1 CH_vmu_132 3 4 0.00000300548
Vigna mungo CM024075.1 1 CH_vmu_171 3 9 0.0000630513
Vitis vinifera chr9 1 CH_vvi_2 20 46 4.6295e-44
Vitis vinifera chr10 1 CH_vvi_49 8 18 0.00000000000000473723
Zea mays 1 1 CH_zma_95 3 3 0.00000112161
Aethionema arabicum LG-4 2 CH_aar_170 4 49 0.000100174
Actinidia chinensis Lachesis_group25 2 CH_ach_54 3 4 0.00000148702
Arabidopsis lyrata scaffold_2 2 CH_aly_37 7 58 0.0000000000124276
Avicennia marina ScioBoG_102840_HRSCAF_103099 2 CH_ama_36 3 3 0.00000245339
Aquilegia oxysepala CHR01 2 CH_aox_107 3 4 0.00000636601
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_13 11 22 3.40886e-28
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_29 9 17 1.53339e-22
Arabidopsis thaliana Chr1 2 CH_ath_61 4 5 0.000000000353041
Brassica oleracea C5 2 CH_bol_288 3 15 0.00012015
Camellia sinensis var. sinensis Chr8 2 CH_camsi_13 11 38 3.22289e-25
Camellia sinensis var. sinensis Chr10 2 CH_camsi_508 3 5 0.0000359336
Cannabis sativa NC_044375.1 2 CH_cansat_177 3 4 0.000017586
Cannabis sativa NC_044373.1 2 CH_cansat_199 4 28 0.0000410249
Capsicum annuum PGAv.1.6.scaffold594 2 CH_can_5 10 16 1.01829e-29
Cicer arietinum L. Ca_LG8_v3 2 CH_car_21 5 36 0.0000000057868
Corylus avellana 7 2 CH_cav_309 3 9 0.000211421
Chara braunii BFEA01000197 2 CH_cbr_73 2 2 0.0000719269
Coffea canephora chr0 2 CH_ccan_337 3 70 0.000600628
Citrus clementina scaffold_4 2 CH_ccl_36 6 7 0.00000000000000100402
Cardamine hirsuta Chr2 2 CH_chi_102 4 8 0.0000000228666
Carya illinoinensis Chr16 2 CH_cil_123 5 7 0.000000000047272
Carya illinoinensis Chr02 2 CH_cil_297 3 3 0.00000766477
Carya illinoinensis Chr01 2 CH_cil_51 7 11 1.71154e-16
Carya illinoinensis Chr15 2 CH_cil_73 6 8 0.0000000000000312587
Cucumis melo chr09 2 CH_cme_74 4 9 0.0000000235467
Carica papaya supercontig_91 2 CH_cpa_255 3 16 0.000265061
Chenopodium quinoa C_Quinoa_Scaffold_2716 2 CH_cqu_117 4 5 0.00000000954729
Chenopodium quinoa C_Quinoa_Scaffold_2487 2 CH_cqu_156 4 8 0.000000133523
Chenopodium quinoa C_Quinoa_Scaffold_3966 2 CH_cqu_390 3 7 0.00015655
Chenopodium quinoa C_Quinoa_Scaffold_1677 2 CH_cqu_55 5 6 0.00000000000461454
Capsella rubella scaffold_2 2 CH_cru_175 3 4 0.00000112251
Cucumis sativus L. chr5 2 CH_csa_168 3 4 0.0000119537
Cucumis sativus L. chr2 2 CH_csa_31 6 9 0.0000000000000131397
Davidia involucrata GWHABJS00000017 2 CH_din_174 3 3 0.0000021011
Davidia involucrata GWHABJS00000016 2 CH_din_218 3 5 0.0000209997
Davidia involucrata GWHABJS00000001 2 CH_din_276 3 7 0.0000734596
Davidia involucrata GWHABJS00000003 2 CH_din_74 4 5 0.00000000341441
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_240 3 7 0.0000232405
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_299 3 9 0.0000557577
Eucalyptus grandis Chr06 2 CH_egr_57 9 11 5.33972e-24
Fragaria x ananassa Fvb6-3 2 CH_fan_100 4 6 0.000000011661
Fragaria x ananassa Fvb6-1 2 CH_fan_110 4 7 0.0000000272029
Fragaria x ananassa Fvb6-2 2 CH_fan_499 3 10 0.00033574
Fragaria x ananassa Fvb6-4 2 CH_fan_55 6 38 0.000000000148181
Fragaria vesca Fvb6 2 CH_fve_127 4 11 0.0000000424565
Gossypium hirsutum D06 2 CH_ghi_146 4 5 0.000000000417795
Gossypium raimondii Chr10 2 CH_gra_97 4 6 0.0000000042056
Hydrangea macrophylla Hma1.2p1_0286F.1 2 CH_hma_71 4 17 0.000000683178
Lupinus albus Lalb_Chr22 2 CH_lal_96 3 4 0.000000330509
Lotus japonicus chr3 2 CH_lja_164 4 17 0.000000858984
Lotus japonicus chr2 2 CH_lja_40 5 6 0.000000000000543584
Lonicera japonica GWHAAZE00000002 2 CH_lonja_281 3 3 0.00000439001
Magnolia biondii Chr13 2 CH_mbi_189 3 5 0.000000353765
Malus domestica Chr09 2 CH_mdo_521 3 7 0.000173413
Malus domestica Chr17 2 CH_mdo_56 7 24 0.0000000000000387614
Malus domestica Chr17 2 CH_mdo_87 5 7 0.0000000000172944
Nelumbo nucifera chr8 2 CH_nnu_63 5 30 0.00000000177902
Oryza sativa ssp. japonica chr02 2 CH_osa_74 4 9 0.0000000116847
Punica granatum NC_045134.1 2 CH_pgr_71 5 24 0.00000000126966
Prunus persica Pp03 2 CH_ppe_26 8 12 9.92167e-22
Pisum sativum chr1LG6 2 CH_psa_76 4 13 0.0000000106484
Papaver somniferum NC_039364.1 2 CH_pso_143 4 7 0.00000000120061
Populus trichocarpa Chr14 2 CH_ptr_237 3 3 0.0000022802
Populus trichocarpa Chr07 2 CH_ptr_289 3 6 0.0000455645
Phaseolus vulgaris Chr04 2 CH_pvu_225 3 4 0.0000117862
Phaseolus vulgaris Chr06 2 CH_pvu_25 7 10 5.10074e-18
Quercus lobata 5 2 CH_qlo_147 9 56 0.0000000000000524252
Quercus lobata 11 2 CH_qlo_30 12 27 2.34019e-26
Quercus lobata 5 2 CH_qlo_545 4 10 0.00000452185
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_14 14 54 3.19006e-30
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_178 5 11 0.00000000124403
Rhododendron simsii chr03 2 CH_rsi_226 3 7 0.000000874315
Salvia bowleyana GWHASIU00000002 2 CH_sbo_213 3 5 0.00000372514
Salix brachista GWHAAZH00000007 2 CH_sbr_189 3 4 0.0000133377
Salix brachista GWHAAZH00000018 2 CH_sbr_96 6 71 0.0000000251481
Simmondsia chinensis GWHAASQ00000006 2 CH_sci_233 2 4 0.000255428
Sechium edule LG03 2 CH_sed_104 3 3 0.000000641322
Solanum lycopersicum SL4.0ch12 2 CH_sly_161 3 3 0.000000103353
Selaginella moellendorffii scaffold_98 2 CH_smo_152 2 2 0.000560224
Schrenkiella parvula ch5-7 2 CH_spa_97 3 3 0.000000185978
Solanum pennellii Spenn-ch12 2 CH_spe_169 3 4 0.000000415433
Solanum tuberosum ST4.03ch12 2 CH_stu_115 4 9 0.00000000177978
Selenicereus undatus Scaffold_33675 2 CH_sun_2 11 30 1.19095e-26
Selenicereus undatus Scaffold_19641 2 CH_sun_70 3 3 0.00000360376
Trochodendron aralioides group10 2 CH_tar_17 7 30 0.0000000000000128328
Theobroma cacao Chromosome_6 2 CH_tca_240 3 6 0.0000135093
Tarenaya hassleriana NW_010964598.1 2 CH_tha_23 4 4 0.000000000337384
Tripterygium wilfordii NC_052232.1 2 CH_twi_194 3 6 0.0000912723
Utricularia gibba unitig_748 2 CH_ugi_19 4 11 0.0000000274442
Utricularia gibba unitig_578 2 CH_ugi_97 3 6 0.00000906129
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_291 3 10 0.000186142
Vigna mungo CM024077.1 2 CH_vmu_132 3 4 0.00000300548
Vigna mungo CM024075.1 2 CH_vmu_171 3 9 0.0000630513
Vitis vinifera chr9 2 CH_vvi_2 20 46 4.6295e-44
Vitis vinifera chr10 2 CH_vvi_49 8 18 0.00000000000000473723
Zea mays 1 2 CH_zma_95 3 3 0.00000112161

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001