Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 1 CH_aar_101 5 10 0.0000037458
Arabidopsis lyrata scaffold_3 1 CH_aly_434 3 3 0.000793916
Arabidopsis thaliana Chr3 1 CH_ath_66 6 12 0.000000000762108
Brassica rapa A01 1 CH_bra_170 4 5 0.0000147536
Brassica rapa A05 1 CH_bra_214 5 19 0.0000921943
Cannabis sativa NC_044377.1 1 CH_cansat_147 7 35 0.00000102083
Cardamine hirsuta Chr3 1 CH_chi_98 5 5 0.0000000190868
Capsella rubella scaffold_3 1 CH_cru_201 4 4 0.00000478815
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_315 5 19 0.000118457
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_317 4 7 0.000124654
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_772 4 8 0.00066277
Schrenkiella parvula ch3-1 1 CH_spa_119 4 4 0.00000150656
Aethionema arabicum LG-8 2 CH_aar_101 5 10 0.0000037458
Arabidopsis lyrata scaffold_3 2 CH_aly_434 3 3 0.000793916
Arabidopsis thaliana Chr3 2 CH_ath_66 6 12 0.000000000762108
Brassica rapa A01 2 CH_bra_170 4 5 0.0000147536
Brassica rapa A05 2 CH_bra_214 5 19 0.0000921943
Cannabis sativa NC_044377.1 2 CH_cansat_147 7 35 0.00000102083
Cardamine hirsuta Chr3 2 CH_chi_98 5 5 0.0000000190868
Capsella rubella scaffold_3 2 CH_cru_201 4 4 0.00000478815
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_315 5 19 0.000118457
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_317 4 7 0.000124654
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_772 4 8 0.00066277
Schrenkiella parvula ch3-1 2 CH_spa_119 4 4 0.00000150656

Available child term results

Ontology identifier Description Number of clusters
9.1.1.1 Secondary metabolism.terpenoids.mevalonate pathway.acetyl-CoA C-acyltransferase 2
9.1.1.2 Secondary metabolism.terpenoids.mevalonate pathway.3-hydroxy-3-methylglutaryl-CoA synthase 12
9.1.1.3 Secondary metabolism.terpenoids.mevalonate pathway.3-hydroxy-3-methylglutaryl-CoA reductase 38
9.1.1.4 Secondary metabolism.terpenoids.mevalonate pathway.mevalonate kinase 2
9.1.1.5 Secondary metabolism.terpenoids.mevalonate pathway.phosphomevalonate kinase 6
9.1.1.6 Secondary metabolism.terpenoids.mevalonate pathway.mevalonate diphosphate decarboxylase 16
9.1.1.7 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase 7
9.1.2.1.1 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-d-xylulose 5-phosphate import.D-xylulose kinase 20
9.1.2.1.2 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-d-xylulose 5-phosphate import.D-xylulose 5-phosphate transporter 2
9.1.2.2 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-D-xylulose 5-phosphate synthase (DXS) 34
9.1.2.3 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-D-xylulose 5-phosphate reductase (DXR) 17
9.1.2.4 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol synthase 6
9.1.2.5 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2
9.1.2.7 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase 7
9.1.2.8 Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase 34
9.1.3.1.1 Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.geranyl diphosphate synthase complex.catalytic subunit LSU/IDS11 3
9.1.3.2 Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.farnesyl diphosphate synthase 19
9.1.3.3 Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.isoprenyl diphosphate synthase (IDS) 46
9.1.4 Secondary metabolism.terpenoids.terpene biosynthesis 4
9.1.4.1 Secondary metabolism.terpenoids.terpene biosynthesis.isopentenyl phosphate kinase 4
9.1.4.2 Secondary metabolism.terpenoids.terpene biosynthesis.mono-/sesquiterpene-/diterpene synthase 484
9.1.4.3 Secondary metabolism.terpenoids.terpene biosynthesis.triterpenoid synthase 193
9.1.5 Secondary metabolism.terpenoids.cycloartenol biosynthesis 2
9.1.5.1 Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene synthase 42
9.1.5.2 Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene epoxidase 86
9.1.5.3 Secondary metabolism.terpenoids.cycloartenol biosynthesis.cycloartenol synthase 8
9.1.6.1.1 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.phytoene synthase (PSY) 17
9.1.6.1.3 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.zeta-carotene isomerase (Z-ISO) 2
9.1.6.1.4 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.zeta-carotene desaturase (ZDS) 2
9.1.6.1.5 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.lycopene epsilon cyclase (LCY-e) 2
9.1.6.1.6 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.lycopene beta cyclase (LCY-b) 11
9.1.6.2 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls 2
9.1.6.2.1.1 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.carotenoid hydroxylase activities.carotenoid beta-ring hydroxylase (BCH) 8
9.1.6.2.4 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.neoxanthin synthase (ABA4) 5
9.1.6.2.5 Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.neoxanthin biosynthesis cofactor (NXD1) 8
9.1.6.3.1 Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.class-CCD1 carotenoid cleavage dioxygenase 41
9.1.6.3.2 Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.class-CCD4 carotenoid cleavage dioxygenase 43
9.1.6.3.3 Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.zaxinone synthase (ZAS) 71

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001