Functional clusters
Information
- Type MapMan
- Description Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.isoprenyl diphosphate synthase (IDS)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 1 | CH_acertr_223 | 3 | 13 | 0.0000213025 |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_188 | 3 | 5 | 0.00000783887 |
| Aquilegia oxysepala | CHR05 | 1 | CH_aox_96 | 3 | 5 | 0.00000192913 |
| Brassica carinata | ChrB04 | 1 | CH_bca_646 | 3 | 8 | 0.0000679206 |
| Capsicum annuum | PGAv.1.6.scaffold358 | 1 | CH_can_138 | 3 | 3 | 0.000000204743 |
| Citrus clementina | scaffold_5 | 1 | CH_ccl_243 | 3 | 6 | 0.0000169466 |
| Citrus clementina | scaffold_6 | 1 | CH_ccl_80 | 4 | 4 | 0.00000000020868 |
| Cardamine hirsuta | Chr3 | 1 | CH_chi_149 | 3 | 3 | 0.000000602003 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 1 | CH_cqu_506 | 2 | 2 | 0.000473821 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_470 | 2 | 2 | 0.000728147 |
| Eutrema salsugineum | scaffold_13 | 1 | CH_esa_106 | 3 | 3 | 0.000000730677 |
| Gossypium raimondii | Chr11 | 1 | CH_gra_189 | 3 | 4 | 0.00000284491 |
| Olea europaea | chr10 | 1 | CH_oeu_411 | 2 | 2 | 0.000800683 |
| Punica granatum | NC_045129.1 | 1 | CH_pgr_35 | 5 | 12 | 0.00000000000112953 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_568 | 3 | 4 | 0.000000498328 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_160 | 3 | 3 | 0.000000103353 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_141 | 3 | 3 | 0.0000000593529 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_172 | 3 | 3 | 0.0000000787843 |
| Theobroma cacao | Chromosome_4 | 1 | CH_tca_180 | 3 | 4 | 0.000000321816 |
| Tarenaya hassleriana | NW_010971389.1 | 1 | CH_tha_217 | 2 | 2 | 0.00069847 |
| Tripterygium wilfordii | NC_052249.1 | 1 | CH_twi_130 | 3 | 3 | 0.00000380447 |
| Tripterygium wilfordii | NC_052244.1 | 1 | CH_twi_44 | 5 | 8 | 0.0000000000347354 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_341 | 2 | 2 | 0.000278772 |
| Acer truncatum | chr1 | 2 | CH_acertr_223 | 3 | 13 | 0.0000213025 |
| Arabidopsis lyrata | scaffold_3 | 2 | CH_aly_188 | 3 | 5 | 0.00000783887 |
| Aquilegia oxysepala | CHR05 | 2 | CH_aox_96 | 3 | 5 | 0.00000192913 |
| Brassica carinata | ChrB04 | 2 | CH_bca_646 | 3 | 8 | 0.0000679206 |
| Capsicum annuum | PGAv.1.6.scaffold358 | 2 | CH_can_138 | 3 | 3 | 0.000000204743 |
| Citrus clementina | scaffold_5 | 2 | CH_ccl_243 | 3 | 6 | 0.0000169466 |
| Citrus clementina | scaffold_6 | 2 | CH_ccl_80 | 4 | 4 | 0.00000000020868 |
| Cardamine hirsuta | Chr3 | 2 | CH_chi_149 | 3 | 3 | 0.000000602003 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 2 | CH_cqu_506 | 2 | 2 | 0.000473821 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_470 | 2 | 2 | 0.000728147 |
| Eutrema salsugineum | scaffold_13 | 2 | CH_esa_106 | 3 | 3 | 0.000000730677 |
| Gossypium raimondii | Chr11 | 2 | CH_gra_189 | 3 | 4 | 0.00000284491 |
| Olea europaea | chr10 | 2 | CH_oeu_411 | 2 | 2 | 0.000800683 |
| Punica granatum | NC_045129.1 | 2 | CH_pgr_35 | 5 | 12 | 0.00000000000112953 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_568 | 3 | 4 | 0.000000498328 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_160 | 3 | 3 | 0.000000103353 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_141 | 3 | 3 | 0.0000000593529 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_172 | 3 | 3 | 0.0000000787843 |
| Theobroma cacao | Chromosome_4 | 2 | CH_tca_180 | 3 | 4 | 0.000000321816 |
| Tarenaya hassleriana | NW_010971389.1 | 2 | CH_tha_217 | 2 | 2 | 0.00069847 |
| Tripterygium wilfordii | NC_052249.1 | 2 | CH_twi_130 | 3 | 3 | 0.00000380447 |
| Tripterygium wilfordii | NC_052244.1 | 2 | CH_twi_44 | 5 | 8 | 0.0000000000347354 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_341 | 2 | 2 | 0.000278772 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |