Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cicer arietinum L. Ca_LG6_v3 1 CH_car_216 2 3 0.000233481
Citrus clementina scaffold_8 1 CH_ccl_69 4 7 0.0000000000579595
Daucus carota DCARv2_Chr6 1 CH_dca_324 2 2 0.000191333
Erythranthe guttata scaffold_2 1 CH_egut_349 2 3 0.000218436
Fragaria x ananassa Fvb2-2 1 CH_fan_522 2 2 0.000388576
Fragaria vesca Fvb2 1 CH_fve_384 2 4 0.00035344
Helianthus annuus HanXRQChr16 1 CH_han_651 2 2 0.000386429
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_538 2 2 0.00077101
Oryza sativa ssp. japonica chr03 1 CH_osa_223 2 2 0.0000528123
Prunus persica Pp08 1 CH_ppe_354 2 2 0.0000745962
Pisum sativum chr7LG7 1 CH_psa_320 2 4 0.000312965
Quercus lobata 11 1 CH_qlo_76 8 67 2.00696e-18
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_494 2 2 0.0000398653
Rhododendron simsii chr11 1 CH_rsi_505 2 2 0.000387184
Salvia bowleyana GWHASIU00000002 1 CH_sbo_152 3 8 0.00000017387
Sequoiadendron giganteum chr6 1 CH_sgi_1144 2 2 0.000146145
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_279 2 2 0.0000929238
Cicer arietinum L. Ca_LG6_v3 2 CH_car_216 2 3 0.000233481
Citrus clementina scaffold_8 2 CH_ccl_69 4 7 0.0000000000579595
Daucus carota DCARv2_Chr6 2 CH_dca_324 2 2 0.000191333
Erythranthe guttata scaffold_2 2 CH_egut_349 2 3 0.000218436
Fragaria x ananassa Fvb2-2 2 CH_fan_522 2 2 0.000388576
Fragaria vesca Fvb2 2 CH_fve_384 2 4 0.00035344
Helianthus annuus HanXRQChr16 2 CH_han_651 2 2 0.000386429
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_538 2 2 0.00077101
Oryza sativa ssp. japonica chr03 2 CH_osa_223 2 2 0.0000528123
Prunus persica Pp08 2 CH_ppe_354 2 2 0.0000745962
Pisum sativum chr7LG7 2 CH_psa_320 2 4 0.000312965
Quercus lobata 11 2 CH_qlo_76 8 67 2.00696e-18
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_494 2 2 0.0000398653
Rhododendron simsii chr11 2 CH_rsi_505 2 2 0.000387184
Salvia bowleyana GWHASIU00000002 2 CH_sbo_152 3 8 0.00000017387
Sequoiadendron giganteum chr6 2 CH_sgi_1144 2 2 0.000146145
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_279 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001