Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.phytoene synthase (PSY)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR01 1 CH_aox_288 2 2 0.000481193
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_232 2 2 0.000248375
Carpinus fangiana Cfa04 1 CH_cfa_390 2 2 0.000757346
Chenopodium quinoa C_Quinoa_Scaffold_3107 1 CH_cqu_554 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_2088 1 CH_cqu_555 2 2 0.000710732
Quercus lobata 8 1 CH_qlo_276 4 9 0.000000000780098
Rhododendron simsii chr11 1 CH_rsi_440 2 2 0.000193592
Selenicereus undatus Scaffold_33680 1 CH_sun_203 2 2 0.000217992
Aquilegia oxysepala CHR01 2 CH_aox_288 2 2 0.000481193
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_232 2 2 0.000248375
Carpinus fangiana Cfa04 2 CH_cfa_390 2 2 0.000757346
Chenopodium quinoa C_Quinoa_Scaffold_3107 2 CH_cqu_554 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_2088 2 CH_cqu_555 2 2 0.000710732
Eucalyptus grandis Chr06 2 CH_egr_838 2 2 0.000351165
Quercus lobata 8 2 CH_qlo_276 4 9 0.000000000780098
Rhododendron simsii chr11 2 CH_rsi_440 2 2 0.000193592
Selenicereus undatus Scaffold_33680 2 CH_sun_203 2 2 0.000217992

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001