Functional clusters
Information
- Type MapMan
- Description Secondary metabolism.phenolics.p-coumaroyl-CoA biosynthesis.phenylalanine ammonia lyase activity.phenylalanine ammonia lyase (PAL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 1 | CH_atr_115 | 3 | 5 | 0.000000946474 |
| Cannabis sativa | NC_044372.1 | 1 | CH_cansat_145 | 3 | 4 | 0.000000905386 |
| Capsicum annuum | PGAv.1.6.scaffold363 | 1 | CH_can_129 | 3 | 3 | 0.000000102372 |
| Corylus avellana | 11 | 1 | CH_cav_144 | 3 | 5 | 0.000000881596 |
| Citrus clementina | scaffold_6 | 1 | CH_ccl_488 | 2 | 2 | 0.000820311 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_110 | 3 | 3 | 0.000000172079 |
| Carya illinoinensis | Chr04 | 1 | CH_cil_219 | 3 | 3 | 0.00000011526 |
| Cucumis melo | chr07 | 1 | CH_cme_120 | 3 | 3 | 0.00000242999 |
| Cucumis melo | chr08 | 1 | CH_cme_7 | 8 | 8 | 5.5662e-24 |
| Cucumis sativus L. | chr6 | 1 | CH_csa_12 | 7 | 7 | 1.71569e-19 |
| Cucumis sativus L. | chr4 | 1 | CH_csa_37 | 5 | 5 | 0.00000000000109388 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_482 | 2 | 2 | 0.000673083 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 1 | CH_eca_483 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr07 | 1 | CH_egr_163 | 5 | 5 | 0.0000000000000110904 |
| Helianthus annuus | HanXRQChr13 | 1 | CH_han_246 | 3 | 3 | 0.000000188156 |
| Lotus japonicus | chr1 | 1 | CH_lja_68 | 4 | 4 | 0.000000000362027 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_499 | 2 | 2 | 0.000514007 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_100 | 5 | 45 | 0.00000000284549 |
| Oryza sativa ssp. japonica | chr02 | 1 | CH_osa_139 | 3 | 4 | 0.000000937056 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_507 | 2 | 2 | 0.000578001 |
| Quercus lobata | 7 | 1 | CH_qlo_971 | 2 | 2 | 0.000516289 |
| Rhododendron simsii | chr03 | 1 | CH_rsi_172 | 3 | 3 | 0.0000000624652 |
| Salix brachista | GWHAAZH00000008 | 1 | CH_sbr_107 | 3 | 3 | 0.000000119127 |
| Sechium edule | LG14 | 1 | CH_sed_125 | 3 | 3 | 0.00000277906 |
| Sechium edule | LG03 | 1 | CH_sed_48 | 4 | 4 | 0.00000000109053 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_1364 | 2 | 2 | 0.000730727 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_93 | 4 | 5 | 0.000000000127398 |
| Solanum pennellii | Spenn-ch09 | 1 | CH_spe_64 | 4 | 4 | 0.0000000000871225 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_185 | 3 | 3 | 0.000000220596 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_235 | 1 | CH_tpr_154 | 3 | 5 | 0.0000030075 |
| Tripterygium wilfordii | NC_052252.1 | 1 | CH_twi_311 | 2 | 2 | 0.00083626 |
| Utricularia gibba | unitig_749 | 1 | CH_ugi_257 | 2 | 2 | 0.000440755 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_113 | 3 | 3 | 0.000000129529 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_74 | 3 | 5 | 0.0000016375 |
| Vitis vinifera | chr16 | 1 | CH_vvi_25 | 8 | 13 | 1.79259e-20 |
| Zea mays | 5 | 1 | CH_zma_105 | 3 | 5 | 0.00000258787 |
| Zea mays | 4 | 1 | CH_zma_91 | 3 | 3 | 0.000000647082 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 2 | CH_atr_115 | 3 | 5 | 0.000000946474 |
| Cannabis sativa | NC_044372.1 | 2 | CH_cansat_145 | 3 | 4 | 0.000000905386 |
| Capsicum annuum | PGAv.1.6.scaffold363 | 2 | CH_can_129 | 3 | 3 | 0.000000102372 |
| Corylus avellana | 11 | 2 | CH_cav_144 | 3 | 5 | 0.000000881596 |
| Citrus clementina | scaffold_6 | 2 | CH_ccl_488 | 2 | 2 | 0.000820311 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_110 | 3 | 3 | 0.000000172079 |
| Carya illinoinensis | Chr04 | 2 | CH_cil_219 | 3 | 3 | 0.00000011526 |
| Cucumis melo | chr07 | 2 | CH_cme_120 | 3 | 3 | 0.00000242999 |
| Cucumis melo | chr08 | 2 | CH_cme_7 | 8 | 8 | 5.5662e-24 |
| Cucumis sativus L. | chr6 | 2 | CH_csa_12 | 7 | 7 | 1.71569e-19 |
| Cucumis sativus L. | chr4 | 2 | CH_csa_37 | 5 | 5 | 0.00000000000109388 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_482 | 2 | 2 | 0.000673083 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 2 | CH_eca_483 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr07 | 2 | CH_egr_163 | 5 | 5 | 0.0000000000000110904 |
| Helianthus annuus | HanXRQChr13 | 2 | CH_han_246 | 3 | 3 | 0.000000188156 |
| Lotus japonicus | chr1 | 2 | CH_lja_68 | 4 | 4 | 0.000000000362027 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_499 | 2 | 2 | 0.000514007 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_100 | 5 | 45 | 0.00000000284549 |
| Oryza sativa ssp. japonica | chr02 | 2 | CH_osa_139 | 3 | 4 | 0.000000937056 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_507 | 2 | 2 | 0.000578001 |
| Quercus lobata | 7 | 2 | CH_qlo_971 | 2 | 2 | 0.000516289 |
| Rhododendron simsii | chr03 | 2 | CH_rsi_172 | 3 | 3 | 0.0000000624652 |
| Salix brachista | GWHAAZH00000008 | 2 | CH_sbr_107 | 3 | 3 | 0.000000119127 |
| Sechium edule | LG14 | 2 | CH_sed_125 | 3 | 3 | 0.00000277906 |
| Sechium edule | LG03 | 2 | CH_sed_48 | 4 | 4 | 0.00000000109053 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_1364 | 2 | 2 | 0.000730727 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_93 | 4 | 5 | 0.000000000127398 |
| Solanum pennellii | Spenn-ch09 | 2 | CH_spe_64 | 4 | 4 | 0.0000000000871225 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_185 | 3 | 3 | 0.000000220596 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_235 | 2 | CH_tpr_154 | 3 | 5 | 0.0000030075 |
| Tripterygium wilfordii | NC_052252.1 | 2 | CH_twi_311 | 2 | 2 | 0.00083626 |
| Utricularia gibba | unitig_749 | 2 | CH_ugi_257 | 2 | 2 | 0.000440755 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_113 | 3 | 3 | 0.000000129529 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_74 | 3 | 5 | 0.0000016375 |
| Vitis vinifera | chr16 | 2 | CH_vvi_25 | 8 | 13 | 1.79259e-20 |
| Zea mays | 5 | 2 | CH_zma_105 | 3 | 5 | 0.00000258787 |
| Zea mays | 4 | 2 | CH_zma_91 | 3 | 3 | 0.000000647082 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |