Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.phenolics.flavonoid biosynthesis.chalcones.chalcone synthase activity.chalcone synthase (CHS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 1 CH_acertr_190 3 6 0.00000298098
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_2 25 50 4.587e-60
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 1 CH_arhy_5 20 29 4.76797e-51
Brassica carinata ChrC03 1 CH_bca_979 2 2 0.00059854
Beta vulgaris Chr1_EL10_PGA_scaffold3 1 CH_bvu_50 4 5 0.000000000595839
Cannabis sativa NC_044379.1 1 CH_cansat_134 3 4 0.000000517376
Cicer arietinum L. Ca_LG8_v3 1 CH_car_40 3 3 0.0000000908664
Corylus avellana 5 1 CH_cav_409 2 2 0.000460017
Citrus clementina scaffold_8 1 CH_ccl_123 4 7 0.0000000191135
Carpinus fangiana Cfa03 1 CH_cfa_340 2 2 0.000454408
Corchorus olitorius AWUE01016403.1 1 CH_col_23 3 3 0.000000128001
Chenopodium quinoa C_Quinoa_Scaffold_3458 1 CH_cqu_115 4 5 0.0000000077289
Chenopodium quinoa C_Quinoa_Scaffold_1699 1 CH_cqu_249 3 3 0.00000383916
Chenopodium quinoa C_Quinoa_Scaffold_2888 1 CH_cqu_278 3 4 0.0000153516
Daucus carota DCARv2_Chr5 1 CH_dca_35 5 11 0.00000000000320889
Davidia involucrata GWHABJS00000016 1 CH_din_323 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_186 3 5 0.00000105693
Erythranthe guttata scaffold_7 1 CH_egut_122 3 3 0.00000000795325
Fragaria vesca Fvb2 1 CH_fve_333 2 2 0.00017673
Glycine max Gm08 1 CH_gma_6 12 20 3.49631e-34
Gossypium raimondii Chr11 1 CH_gra_438 2 2 0.00080416
Helianthus annuus HanXRQChr11 1 CH_han_365 3 6 0.00000985135
Lotus japonicus Contig00222 1 CH_lja_83 6 53 0.00000000476502
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_43 6 14 6.78592e-16
Malus domestica Chr04 1 CH_mdo_281 3 5 0.00000181155
Malus domestica Chr15 1 CH_mdo_323 3 7 0.00000633912
Manihot esculenta Chromosome11 1 CH_mes_100 4 5 0.000000000239062
Marchantia polymorpha scaffold_9 1 CH_mpo_43 4 7 0.000000683862
Medicago truncatula chr7 1 CH_mtr_130 5 7 0.00000000000912873
Medicago truncatula chr1 1 CH_mtr_400 3 3 0.0000033678
Medicago truncatula chr5 1 CH_mtr_65 6 7 0.00000000000000100056
Olea europaea scaffold1244 1 CH_oeu_294 2 2 0.000320273
Physcomitrium patens Chr19 1 CH_ppa_14 4 4 0.00000000334391
Physcomitrium patens Chr02 1 CH_ppa_16 5 16 0.00000000712782
Prunus persica Pp01 1 CH_ppe_451 2 2 0.000447577
Papaver somniferum NC_039361.1 1 CH_pso_623 2 2 0.000472989
Populus trichocarpa Chr03 1 CH_ptr_188 3 3 0.00000028064
Phaseolus vulgaris Chr02 1 CH_pvu_9 9 9 2.41236e-27
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_655 2 2 0.000239192
Rhododendron simsii chr09 1 CH_rsi_132 4 8 0.00000000394842
Salix brachista GWHAAZH00000003 1 CH_sbr_111 3 3 0.000000208471
Simmondsia chinensis GWHAASQ00000007 1 CH_sci_77 3 3 0.000000608964
Sequoiadendron giganteum chr7 1 CH_sgi_19 12 34 6.11574e-33
Solanum tuberosum ST4.03ch12 1 CH_stu_84 5 14 0.000000000013036
Trochodendron aralioides group17 1 CH_tar_74 4 6 0.00000000321249
Tarenaya hassleriana NW_010960188.1 1 CH_tha_135 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_51 4 13 0.00000000464967
Vanilla planifolia CM028161.1 1 CH_vpl_25 4 5 0.00000000127054
Vitis vinifera chr16 1 CH_vvi_7 11 22 2.14102e-30
Acer truncatum chr4 2 CH_acertr_190 3 6 0.00000298098
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_2 25 50 4.587e-60
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 2 CH_arhy_5 20 29 4.76797e-51
Brassica carinata ChrC03 2 CH_bca_979 2 2 0.00059854
Beta vulgaris Chr1_EL10_PGA_scaffold3 2 CH_bvu_50 4 5 0.000000000595839
Cannabis sativa NC_044379.1 2 CH_cansat_134 3 4 0.000000517376
Cicer arietinum L. Ca_LG8_v3 2 CH_car_40 3 3 0.0000000908664
Corylus avellana 5 2 CH_cav_409 2 2 0.000460017
Citrus clementina scaffold_8 2 CH_ccl_123 4 7 0.0000000191135
Carpinus fangiana Cfa03 2 CH_cfa_340 2 2 0.000454408
Corchorus olitorius AWUE01016403.1 2 CH_col_23 3 3 0.000000128001
Chenopodium quinoa C_Quinoa_Scaffold_3458 2 CH_cqu_115 4 5 0.0000000077289
Chenopodium quinoa C_Quinoa_Scaffold_1699 2 CH_cqu_249 3 3 0.00000383916
Chenopodium quinoa C_Quinoa_Scaffold_2888 2 CH_cqu_278 3 4 0.0000153516
Daucus carota DCARv2_Chr5 2 CH_dca_35 5 11 0.00000000000320889
Davidia involucrata GWHABJS00000016 2 CH_din_323 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_186 3 5 0.00000105693
Eucalyptus grandis Chr05 2 CH_egr_370 4 11 0.0000000138828
Erythranthe guttata scaffold_7 2 CH_egut_122 3 3 0.00000000795325
Fragaria vesca Fvb2 2 CH_fve_333 2 2 0.00017673
Gossypium hirsutum D05 2 CH_ghi_654 3 15 0.000330286
Glycine max Gm08 2 CH_gma_6 12 20 3.49631e-34
Gossypium raimondii Chr11 2 CH_gra_438 2 2 0.00080416
Helianthus annuus HanXRQChr11 2 CH_han_365 3 6 0.00000985135
Lotus japonicus Contig00222 2 CH_lja_83 6 53 0.00000000476502
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_43 6 14 6.78592e-16
Malus domestica Chr04 2 CH_mdo_281 3 5 0.00000181155
Malus domestica Chr15 2 CH_mdo_323 3 7 0.00000633912
Manihot esculenta Chromosome11 2 CH_mes_100 4 5 0.000000000239062
Marchantia polymorpha scaffold_9 2 CH_mpo_43 4 7 0.000000683862
Olea europaea scaffold1244 2 CH_oeu_294 2 2 0.000320273
Physcomitrium patens Chr19 2 CH_ppa_14 4 4 0.00000000334391
Physcomitrium patens Chr02 2 CH_ppa_16 5 16 0.00000000712782
Prunus persica Pp01 2 CH_ppe_451 2 2 0.000447577
Papaver somniferum NC_039361.1 2 CH_pso_623 2 2 0.000472989
Populus trichocarpa Chr03 2 CH_ptr_188 3 3 0.00000028064
Phaseolus vulgaris Chr02 2 CH_pvu_9 9 9 2.41236e-27
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_655 2 2 0.000239192
Rhododendron simsii chr09 2 CH_rsi_132 4 8 0.00000000394842
Salix brachista GWHAAZH00000003 2 CH_sbr_111 3 3 0.000000208471
Simmondsia chinensis GWHAASQ00000007 2 CH_sci_77 3 3 0.000000608964
Sequoiadendron giganteum chr7 2 CH_sgi_19 12 34 6.11574e-33
Solanum tuberosum ST4.03ch12 2 CH_stu_84 5 14 0.000000000013036
Trochodendron aralioides group17 2 CH_tar_74 4 6 0.00000000321249
Tarenaya hassleriana NW_010960188.1 2 CH_tha_135 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_51 4 13 0.00000000464967
Vanilla planifolia CM028161.1 2 CH_vpl_25 4 5 0.00000000127054
Vitis vinifera chr16 2 CH_vvi_7 11 22 2.14102e-30

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001