Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.phenolics.flavonoid biosynthesis.flavonols.flavonol synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_81 3 4 0.000000499369
Actinidia chinensis Lachesis_group28 1 CH_ach_195 2 2 0.000325928
Arabidopsis lyrata scaffold_8 1 CH_aly_159 3 5 0.00000130674
Aquilegia oxysepala CHR06 1 CH_aox_162 2 2 0.0000801989
Arabidopsis thaliana Chr5 1 CH_ath_30 4 4 0.0000000000010582
Amborella trichopoda AmTr_v1.0_scaffold00073 1 CH_atr_133 3 11 0.0000062445
Brassica carinata ChrB04 1 CH_bca_106 4 6 0.000000000439929
Brassica carinata ChrB02 1 CH_bca_356 3 4 0.000000997894
Brassica oleracea C3 1 CH_bol_385 2 3 0.000490292
Brassica rapa A02 1 CH_bra_379 2 2 0.000901558
Brassica rapa A06 1 CH_bra_380 2 2 0.000901558
Camellia sinensis var. sinensis Chr9 1 CH_camsi_735 2 2 0.000275128
Cicer arietinum L. Ca_LG5_v3 1 CH_car_258 2 4 0.000466944
Corylus avellana 1 1 CH_cav_451 2 3 0.000689981
Cardamine hirsuta Chr8 1 CH_chi_59 4 4 0.000000000014862
Carya illinoinensis Chr05 1 CH_cil_309 3 12 0.0000126697
Capsella rubella scaffold_8 1 CH_cru_17 6 6 2.17285e-17
Capsella rubella scaffold_8 1 CH_cru_181 3 3 0.00000132315
Davidia involucrata GWHABJS00000002 1 CH_din_18 5 6 0.00000000000000591265
Eutrema salsugineum scaffold_6 1 CH_esa_95 3 3 0.000000304449
Gossypium raimondii Chr12 1 CH_gra_309 2 2 0.000160832
Helianthus annuus HanXRQChr09 1 CH_han_434 2 2 0.0000386429
Lupinus albus Lalb_Chr17 1 CH_lal_79 3 3 0.0000000413171
Lonicera japonica GWHAAZE00000004 1 CH_lonja_547 2 2 0.000359324
Magnolia biondii Chr03 1 CH_mbi_150 3 4 0.0000000566069
Manihot esculenta Chromosome02 1 CH_mes_368 2 2 0.000183189
Prunus persica Pp01 1 CH_ppe_89 4 6 0.0000000000186801
Papaver somniferum NC_039360.1 1 CH_pso_256 3 5 0.00000015218
Papaver somniferum NW_020653081.1 1 CH_pso_323 3 11 0.00000251042
Populus trichocarpa Chr04 1 CH_ptr_440 2 2 0.000346801
Rhododendron simsii chr06 1 CH_rsi_173 3 3 0.0000000624652
Salvia bowleyana GWHASIU00000005 1 CH_sbo_80 4 14 0.000000000282789
Sequoiadendron giganteum chr2 1 CH_sgi_1231 2 2 0.000292291
Sequoiadendron giganteum chr11 1 CH_sgi_1232 2 2 0.000292291
Sapria himalayana scaffold12_13443846 1 CH_shi_106 2 2 0.0000571804
Schrenkiella parvula ch2-4 1 CH_spa_89 3 3 0.0000000929892
Selenicereus undatus Scaffold_33675 1 CH_sun_128 2 2 0.0000726639
Theobroma cacao Chromosome_8 1 CH_tca_417 2 3 0.000659107
Vitis vinifera chr18 1 CH_vvi_164 3 7 0.000000303708
Aethionema arabicum LG-1 2 CH_aar_81 3 4 0.000000499369
Actinidia chinensis Lachesis_group28 2 CH_ach_195 2 2 0.000325928
Arabidopsis lyrata scaffold_8 2 CH_aly_159 3 5 0.00000130674
Aquilegia oxysepala CHR06 2 CH_aox_162 2 2 0.0000801989
Arabidopsis thaliana Chr5 2 CH_ath_30 4 4 0.0000000000010582
Amborella trichopoda AmTr_v1.0_scaffold00073 2 CH_atr_133 3 11 0.0000062445
Brassica carinata ChrB04 2 CH_bca_106 4 6 0.000000000439929
Brassica carinata ChrB02 2 CH_bca_356 3 4 0.000000997894
Brassica oleracea C3 2 CH_bol_385 2 3 0.000490292
Brassica rapa A02 2 CH_bra_379 2 2 0.000901558
Brassica rapa A06 2 CH_bra_380 2 2 0.000901558
Camellia sinensis var. sinensis Chr9 2 CH_camsi_735 2 2 0.000275128
Cicer arietinum L. Ca_LG5_v3 2 CH_car_258 2 4 0.000466944
Corylus avellana 1 2 CH_cav_451 2 3 0.000689981
Cardamine hirsuta Chr8 2 CH_chi_59 4 4 0.000000000014862
Carya illinoinensis Chr05 2 CH_cil_309 3 12 0.0000126697
Capsella rubella scaffold_8 2 CH_cru_17 6 6 2.17285e-17
Capsella rubella scaffold_8 2 CH_cru_181 3 3 0.00000132315
Davidia involucrata GWHABJS00000002 2 CH_din_18 5 6 0.00000000000000591265
Eutrema salsugineum scaffold_6 2 CH_esa_95 3 3 0.000000304449
Gossypium hirsutum A05 2 CH_ghi_702 2 2 0.000400523
Gossypium hirsutum D04 2 CH_ghi_703 2 2 0.000400523
Gossypium raimondii Chr12 2 CH_gra_309 2 2 0.000160832
Helianthus annuus HanXRQChr09 2 CH_han_434 2 2 0.0000386429
Lupinus albus Lalb_Chr17 2 CH_lal_79 3 3 0.0000000413171
Lonicera japonica GWHAAZE00000004 2 CH_lonja_547 2 2 0.000359324
Magnolia biondii Chr03 2 CH_mbi_150 3 4 0.0000000566069
Manihot esculenta Chromosome02 2 CH_mes_368 2 2 0.000183189
Prunus persica Pp01 2 CH_ppe_89 4 6 0.0000000000186801
Papaver somniferum NC_039360.1 2 CH_pso_256 3 5 0.00000015218
Papaver somniferum NW_020653081.1 2 CH_pso_323 3 11 0.00000251042
Populus trichocarpa Chr04 2 CH_ptr_440 2 2 0.000346801
Rhododendron simsii chr06 2 CH_rsi_173 3 3 0.0000000624652
Salvia bowleyana GWHASIU00000005 2 CH_sbo_80 4 14 0.000000000282789
Sequoiadendron giganteum chr2 2 CH_sgi_1231 2 2 0.000292291
Sequoiadendron giganteum chr11 2 CH_sgi_1232 2 2 0.000292291
Sapria himalayana scaffold12_13443846 2 CH_shi_106 2 2 0.0000571804
Schrenkiella parvula ch2-4 2 CH_spa_89 3 3 0.0000000929892
Selenicereus undatus Scaffold_33675 2 CH_sun_128 2 2 0.0000726639
Theobroma cacao Chromosome_8 2 CH_tca_417 2 3 0.000659107
Vitis vinifera chr18 2 CH_vvi_164 3 7 0.000000303708

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001