Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.phenolics.flavonoid biosynthesis.flavanones.chalcone isomerase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group3 1 CH_ach_194 2 2 0.000325928
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_219 3 3 0.0000000752906
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_220 3 3 0.0000000752906
Arabidopsis thaliana Chr5 1 CH_ath_312 2 2 0.000171895
Amborella trichopoda AmTr_v1.0_scaffold00034 1 CH_atr_295 2 2 0.000476644
Brassica carinata ChrC07 1 CH_bca_801 2 2 0.000213764
Brassica oleracea C8 1 CH_bol_443 2 3 0.000980536
Cicer arietinum L. Ca_LG4_v3 1 CH_car_227 2 2 0.00023349
Cardamine hirsuta Chr5 1 CH_chi_366 2 2 0.000414723
Chenopodium quinoa C_Quinoa_Scaffold_1529 1 CH_cqu_369 2 2 0.000142146
Glycine max Gm20 1 CH_gma_148 3 3 0.0000000432199
Helianthus annuus HanXRQChr15 1 CH_han_211 3 4 0.000000035838
Lotus japonicus chr5 1 CH_lja_46 4 4 0.00000000000548526
Malus domestica Chr01 1 CH_mdo_217 3 4 0.000000172554
Malus domestica Chr07 1 CH_mdo_686 2 2 0.000568817
Medicago truncatula chr1 1 CH_mtr_89 5 8 0.0000000000000251327
Punica granatum NC_045134.1 1 CH_pgr_327 2 2 0.000450214
Pisum sativum chr6LG2 1 CH_psa_145 3 9 0.00000137106
Papaver somniferum NC_039362.1 1 CH_pso_225 3 3 0.0000000639203
Phaseolus vulgaris Chr07 1 CH_pvu_467 2 2 0.000734727
Solanum lycopersicum SL4.0ch05 1 CH_sly_417 2 2 0.000176082
Solanum pennellii Spenn-ch05 1 CH_spe_365 2 2 0.000133437
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_369 2 2 0.000454184
Vigna mungo CM024071.1 1 CH_vmu_74 3 3 0.0000000250507
Actinidia chinensis Lachesis_group3 2 CH_ach_194 2 2 0.000325928
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_219 3 3 0.0000000752906
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_220 3 3 0.0000000752906
Arabidopsis thaliana Chr5 2 CH_ath_312 2 2 0.000171895
Amborella trichopoda AmTr_v1.0_scaffold00034 2 CH_atr_295 2 2 0.000476644
Brassica carinata ChrC07 2 CH_bca_801 2 2 0.000213764
Brassica oleracea C8 2 CH_bol_443 2 3 0.000980536
Cicer arietinum L. Ca_LG4_v3 2 CH_car_227 2 2 0.00023349
Cardamine hirsuta Chr5 2 CH_chi_366 2 2 0.000414723
Chenopodium quinoa C_Quinoa_Scaffold_1529 2 CH_cqu_369 2 2 0.000142146
Eucalyptus grandis Chr10 2 CH_egr_785 2 2 0.000175582
Glycine max Gm20 2 CH_gma_148 3 3 0.0000000432199
Helianthus annuus HanXRQChr15 2 CH_han_211 3 4 0.000000035838
Lotus japonicus chr5 2 CH_lja_46 4 4 0.00000000000548526
Malus domestica Chr01 2 CH_mdo_217 3 4 0.000000172554
Malus domestica Chr07 2 CH_mdo_686 2 2 0.000568817
Punica granatum NC_045134.1 2 CH_pgr_327 2 2 0.000450214
Pisum sativum chr6LG2 2 CH_psa_145 3 9 0.00000137106
Papaver somniferum NC_039362.1 2 CH_pso_225 3 3 0.0000000639203
Phaseolus vulgaris Chr07 2 CH_pvu_467 2 2 0.000734727
Solanum lycopersicum SL4.0ch05 2 CH_sly_417 2 2 0.000176082
Solanum pennellii Spenn-ch05 2 CH_spe_365 2 2 0.000133437
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_369 2 2 0.000454184
Vigna mungo CM024071.1 2 CH_vmu_74 3 3 0.0000000250507

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001