Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.class-CCD4 carotenoid cleavage dioxygenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 1 CH_aar_207 2 2 0.000273698
Aquilegia oxysepala CHR03 1 CH_aox_161 2 2 0.0000801989
Cicer arietinum L. Ca_LG8_v3 1 CH_car_162 2 2 0.0000778301
Citrus clementina scaffold_8 1 CH_ccl_452 2 2 0.000492187
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_156 3 5 0.000000302
Erythranthe guttata scaffold_5 1 CH_egut_43 6 10 0.0000000000000483623
Medicago truncatula chr5 1 CH_mtr_200 3 3 0.00000000253218
Nelumbo nucifera chr1 1 CH_nnu_281 2 2 0.0000436015
Physcomitrium patens Chr25 1 CH_ppa_169 2 2 0.000183818
Populus trichocarpa Chr09 1 CH_ptr_203 3 5 0.00000050107
Rhododendron simsii chr07 1 CH_rsi_441 2 2 0.000193592
Salvia bowleyana GWHASIU00000008 1 CH_sbo_101 4 6 0.00000000209738
Salvia bowleyana GWHASIU00000004 1 CH_sbo_25 8 45 1.35194e-17
Sequoiadendron giganteum chr11 1 CH_sgi_531 3 5 0.000000142381
Solanum lycopersicum SL4.0ch08 1 CH_sly_334 2 2 0.0000586941
Selaginella moellendorffii scaffold_12 1 CH_smo_57 3 12 0.0000114999
Solanum pennellii Spenn-ch08 1 CH_spe_364 2 2 0.000133437
Solanum tuberosum ST4.03ch08 1 CH_stu_467 2 2 0.000153736
Theobroma cacao Chromosome_3 1 CH_tca_247 3 10 0.0000192946
Tripterygium wilfordii NC_052246.1 1 CH_twi_176 2 2 0.0000557507
Utricularia gibba unitig_748 1 CH_ugi_16 3 3 0.00000000809468
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_250 2 2 0.0000929238
Aethionema arabicum LG-6 2 CH_aar_207 2 2 0.000273698
Aquilegia oxysepala CHR03 2 CH_aox_161 2 2 0.0000801989
Cicer arietinum L. Ca_LG8_v3 2 CH_car_162 2 2 0.0000778301
Citrus clementina scaffold_8 2 CH_ccl_452 2 2 0.000492187
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_156 3 5 0.000000302
Erythranthe guttata scaffold_5 2 CH_egut_43 6 10 0.0000000000000483623
Nelumbo nucifera chr1 2 CH_nnu_281 2 2 0.0000436015
Physcomitrium patens Chr25 2 CH_ppa_169 2 2 0.000183818
Populus trichocarpa Chr09 2 CH_ptr_203 3 5 0.00000050107
Rhododendron simsii chr07 2 CH_rsi_441 2 2 0.000193592
Salvia bowleyana GWHASIU00000008 2 CH_sbo_101 4 6 0.00000000209738
Salvia bowleyana GWHASIU00000004 2 CH_sbo_25 8 45 1.35194e-17
Sequoiadendron giganteum chr11 2 CH_sgi_531 3 5 0.000000142381
Solanum lycopersicum SL4.0ch08 2 CH_sly_334 2 2 0.0000586941
Selaginella moellendorffii scaffold_12 2 CH_smo_57 3 12 0.0000114999
Solanum pennellii Spenn-ch08 2 CH_spe_364 2 2 0.000133437
Solanum tuberosum ST4.03ch08 2 CH_stu_467 2 2 0.000153736
Theobroma cacao Chromosome_3 2 CH_tca_247 3 10 0.0000192946
Tripterygium wilfordii NC_052246.1 2 CH_twi_176 2 2 0.0000557507
Utricularia gibba unitig_748 2 CH_ugi_16 3 3 0.00000000809468
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_250 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001