Functional clusters
Information
- Type MapMan
- Description Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.class-CCD4 carotenoid cleavage dioxygenase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aethionema arabicum | LG-6 | 1 | CH_aar_207 | 2 | 2 | 0.000273698 |
Aquilegia oxysepala | CHR03 | 1 | CH_aox_161 | 2 | 2 | 0.0000801989 |
Cicer arietinum L. | Ca_LG8_v3 | 1 | CH_car_162 | 2 | 2 | 0.0000778301 |
Citrus clementina | scaffold_8 | 1 | CH_ccl_452 | 2 | 2 | 0.000492187 |
Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_156 | 3 | 5 | 0.000000302 |
Erythranthe guttata | scaffold_5 | 1 | CH_egut_43 | 6 | 10 | 0.0000000000000483623 |
Medicago truncatula | chr5 | 1 | CH_mtr_200 | 3 | 3 | 0.00000000253218 |
Nelumbo nucifera | chr1 | 1 | CH_nnu_281 | 2 | 2 | 0.0000436015 |
Physcomitrium patens | Chr25 | 1 | CH_ppa_169 | 2 | 2 | 0.000183818 |
Populus trichocarpa | Chr09 | 1 | CH_ptr_203 | 3 | 5 | 0.00000050107 |
Rhododendron simsii | chr07 | 1 | CH_rsi_441 | 2 | 2 | 0.000193592 |
Salvia bowleyana | GWHASIU00000008 | 1 | CH_sbo_101 | 4 | 6 | 0.00000000209738 |
Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_25 | 8 | 45 | 1.35194e-17 |
Sequoiadendron giganteum | chr11 | 1 | CH_sgi_531 | 3 | 5 | 0.000000142381 |
Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_334 | 2 | 2 | 0.0000586941 |
Selaginella moellendorffii | scaffold_12 | 1 | CH_smo_57 | 3 | 12 | 0.0000114999 |
Solanum pennellii | Spenn-ch08 | 1 | CH_spe_364 | 2 | 2 | 0.000133437 |
Solanum tuberosum | ST4.03ch08 | 1 | CH_stu_467 | 2 | 2 | 0.000153736 |
Theobroma cacao | Chromosome_3 | 1 | CH_tca_247 | 3 | 10 | 0.0000192946 |
Tripterygium wilfordii | NC_052246.1 | 1 | CH_twi_176 | 2 | 2 | 0.0000557507 |
Utricularia gibba | unitig_748 | 1 | CH_ugi_16 | 3 | 3 | 0.00000000809468 |
Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_250 | 2 | 2 | 0.0000929238 |
Aethionema arabicum | LG-6 | 2 | CH_aar_207 | 2 | 2 | 0.000273698 |
Aquilegia oxysepala | CHR03 | 2 | CH_aox_161 | 2 | 2 | 0.0000801989 |
Cicer arietinum L. | Ca_LG8_v3 | 2 | CH_car_162 | 2 | 2 | 0.0000778301 |
Citrus clementina | scaffold_8 | 2 | CH_ccl_452 | 2 | 2 | 0.000492187 |
Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_156 | 3 | 5 | 0.000000302 |
Erythranthe guttata | scaffold_5 | 2 | CH_egut_43 | 6 | 10 | 0.0000000000000483623 |
Nelumbo nucifera | chr1 | 2 | CH_nnu_281 | 2 | 2 | 0.0000436015 |
Physcomitrium patens | Chr25 | 2 | CH_ppa_169 | 2 | 2 | 0.000183818 |
Populus trichocarpa | Chr09 | 2 | CH_ptr_203 | 3 | 5 | 0.00000050107 |
Rhododendron simsii | chr07 | 2 | CH_rsi_441 | 2 | 2 | 0.000193592 |
Salvia bowleyana | GWHASIU00000008 | 2 | CH_sbo_101 | 4 | 6 | 0.00000000209738 |
Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_25 | 8 | 45 | 1.35194e-17 |
Sequoiadendron giganteum | chr11 | 2 | CH_sgi_531 | 3 | 5 | 0.000000142381 |
Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_334 | 2 | 2 | 0.0000586941 |
Selaginella moellendorffii | scaffold_12 | 2 | CH_smo_57 | 3 | 12 | 0.0000114999 |
Solanum pennellii | Spenn-ch08 | 2 | CH_spe_364 | 2 | 2 | 0.000133437 |
Solanum tuberosum | ST4.03ch08 | 2 | CH_stu_467 | 2 | 2 | 0.000153736 |
Theobroma cacao | Chromosome_3 | 2 | CH_tca_247 | 3 | 10 | 0.0000192946 |
Tripterygium wilfordii | NC_052246.1 | 2 | CH_twi_176 | 2 | 2 | 0.0000557507 |
Utricularia gibba | unitig_748 | 2 | CH_ugi_16 | 3 | 3 | 0.00000000809468 |
Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_250 | 2 | 2 | 0.0000929238 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |