Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.class-CCD1 carotenoid cleavage dioxygenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00022 1 CH_atr_188 2 2 0.0000794407
Brassica rapa A09 1 CH_bra_231 2 2 0.000128794
Cannabis sativa NC_044372.1 1 CH_cansat_21 5 5 1.39464e-16
Capsicum annuum PGAv.1.6.scaffold219 1 CH_can_280 2 2 0.0000826105
Corylus avellana 1 1 CH_cav_75 3 3 0.00000000881765
Citrus clementina scaffold_4 1 CH_ccl_311 2 2 0.0000820311
Carya illinoinensis Chr13 1 CH_cil_359 2 2 0.0000619828
Capsella rubella scaffold_2 1 CH_cru_329 2 2 0.000219346
Daucus carota DCARv2_Chr6 1 CH_dca_129 3 6 0.000000488043
Hydrangea macrophylla Hma1.2p1_0184F.1 1 CH_hma_245 2 2 0.000111086
Medicago truncatula chr8 1 CH_mtr_129 4 7 0.00000000000728251
Nelumbo nucifera chr2 1 CH_nnu_394 2 6 0.000435986
Petunia axillaris Peaxi162Scf00953 1 CH_pax_89 3 6 0.000000148487
Pisum sativum chr4LG4 1 CH_psa_224 2 2 0.0000521635
Populus trichocarpa Chr01 1 CH_ptr_157 3 3 0.0000000200457
Quercus lobata 4 1 CH_qlo_764 2 3 0.000154883
Salvia bowleyana GWHASIU00000003 1 CH_sbo_196 3 15 0.00000141247
Sechium edule LG07 1 CH_sed_205 2 2 0.0000713419
Solanum lycopersicum SL4.0ch01 1 CH_sly_333 2 2 0.0000586941
Solanum pennellii Spenn-ch01 1 CH_spe_289 2 2 0.000044479
Vitis vinifera chr13 1 CH_vvi_374 2 4 0.000456343
Amborella trichopoda AmTr_v1.0_scaffold00022 2 CH_atr_188 2 2 0.0000794407
Brassica rapa A09 2 CH_bra_231 2 2 0.000128794
Cannabis sativa NC_044372.1 2 CH_cansat_21 5 5 1.39464e-16
Capsicum annuum PGAv.1.6.scaffold219 2 CH_can_280 2 2 0.0000826105
Corylus avellana 1 2 CH_cav_75 3 3 0.00000000881765
Citrus clementina scaffold_4 2 CH_ccl_311 2 2 0.0000820311
Carya illinoinensis Chr13 2 CH_cil_359 2 2 0.0000619828
Capsella rubella scaffold_2 2 CH_cru_329 2 2 0.000219346
Daucus carota DCARv2_Chr6 2 CH_dca_129 3 6 0.000000488043
Hydrangea macrophylla Hma1.2p1_0184F.1 2 CH_hma_245 2 2 0.000111086
Nelumbo nucifera chr2 2 CH_nnu_394 2 6 0.000435986
Petunia axillaris Peaxi162Scf00953 2 CH_pax_89 3 6 0.000000148487
Pisum sativum chr4LG4 2 CH_psa_224 2 2 0.0000521635
Populus trichocarpa Chr01 2 CH_ptr_157 3 3 0.0000000200457
Quercus lobata 4 2 CH_qlo_764 2 3 0.000154883
Salvia bowleyana GWHASIU00000003 2 CH_sbo_196 3 15 0.00000141247
Sechium edule LG07 2 CH_sed_205 2 2 0.0000713419
Solanum lycopersicum SL4.0ch01 2 CH_sly_333 2 2 0.0000586941
Solanum pennellii Spenn-ch01 2 CH_spe_289 2 2 0.000044479
Vitis vinifera chr13 2 CH_vvi_374 2 4 0.000456343

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001