Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides.flavonol-3-O-glycoside rhamnosyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr9 1 CH_acertr_177 3 8 0.00000166941
Actinidia chinensis Lachesis_group13 1 CH_ach_90 2 2 0.0000543213
Aquilegia oxysepala CHR03 1 CH_aox_324 2 3 0.000721742
Brassica carinata ChrC08 1 CH_bca_1165 2 2 0.000961939
Brassica oleracea C6 1 CH_bol_349 2 2 0.000326861
Camellia sinensis var. sinensis Chr8 1 CH_camsi_582 3 11 0.000085759
Camellia sinensis var. sinensis Chr15 1 CH_camsi_96 5 11 0.00000000000707266
Cannabis sativa NC_044378.1 1 CH_cansat_299 2 2 0.000196993
Coffea canephora chr4 1 CH_ccan_252 2 4 0.000153319
Coffea canephora chr11 1 CH_ccan_281 2 5 0.000255531
Carya illinoinensis Chr15 1 CH_cil_91 5 9 0.000000000000780904
Chenopodium quinoa C_Quinoa_Scaffold_2646 1 CH_cqu_556 2 2 0.000710732
Daucus carota DCARv2_Chr4 1 CH_dca_16 5 5 7.44675e-16
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_157 3 5 0.000000302
Eucalyptus grandis Chr02 1 CH_egr_220 4 5 0.00000000000300743
Fragaria vesca Fvb4 1 CH_fve_348 2 2 0.00017673
Gossypium raimondii Chr12 1 CH_gra_127 3 3 0.0000000862255
Gossypium raimondii Chr03 1 CH_gra_442 2 2 0.00080416
Lonicera japonica GWHAAZE00000005 1 CH_lonja_474 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_98 4 6 0.000000000213867
Magnolia biondii Chr14 1 CH_mbi_245 3 13 0.00000404585
Malus domestica Chr16 1 CH_mdo_616 2 3 0.00034128
Manihot esculenta Chromosome14 1 CH_mes_421 2 2 0.000366379
Oryza sativa ssp. japonica chr06 1 CH_osa_396 2 4 0.000950537
Punica granatum NC_045133.1 1 CH_pgr_54 4 4 0.0000000000443651
Papaver somniferum NW_020651415.1 1 CH_pso_632 2 2 0.000472989
Quercus lobata 10 1 CH_qlo_67 6 7 4.04514e-19
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_702 2 3 0.000358775
Rhododendron simsii chr12 1 CH_rsi_244 3 6 0.00000249782
Rhododendron simsii ctg64 1 CH_rsi_583 2 2 0.000967961
Solanum pennellii Spenn-ch05 1 CH_spe_366 2 2 0.000133437
Solanum tuberosum ST4.03ch05 1 CH_stu_167 3 3 0.0000000787843
Solanum tuberosum ST4.03ch03 1 CH_stu_607 2 2 0.000768679
Trochodendron aralioides group12 1 CH_tar_481 2 3 0.000540303
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_398 2 3 0.00083625
Acer truncatum chr9 2 CH_acertr_177 3 8 0.00000166941
Actinidia chinensis Lachesis_group13 2 CH_ach_90 2 2 0.0000543213
Aquilegia oxysepala CHR03 2 CH_aox_324 2 3 0.000721742
Brassica carinata ChrC08 2 CH_bca_1165 2 2 0.000961939
Brassica oleracea C6 2 CH_bol_349 2 2 0.000326861
Camellia sinensis var. sinensis Chr8 2 CH_camsi_582 3 11 0.000085759
Camellia sinensis var. sinensis Chr15 2 CH_camsi_96 5 11 0.00000000000707266
Cannabis sativa NC_044378.1 2 CH_cansat_299 2 2 0.000196993
Coffea canephora chr4 2 CH_ccan_252 2 4 0.000153319
Coffea canephora chr11 2 CH_ccan_281 2 5 0.000255531
Carya illinoinensis Chr15 2 CH_cil_91 5 9 0.000000000000780904
Chenopodium quinoa C_Quinoa_Scaffold_2646 2 CH_cqu_556 2 2 0.000710732
Daucus carota DCARv2_Chr4 2 CH_dca_16 5 5 7.44675e-16
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_157 3 5 0.000000302
Eucalyptus grandis Chr02 2 CH_egr_220 4 5 0.00000000000300743
Fragaria vesca Fvb4 2 CH_fve_348 2 2 0.00017673
Gossypium hirsutum A04 2 CH_ghi_902 2 2 0.000961256
Gossypium hirsutum D04 2 CH_ghi_903 2 2 0.000961256
Gossypium raimondii Chr12 2 CH_gra_127 3 3 0.0000000862255
Gossypium raimondii Chr03 2 CH_gra_442 2 2 0.00080416
Lonicera japonica GWHAAZE00000005 2 CH_lonja_474 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_98 4 6 0.000000000213867
Magnolia biondii Chr14 2 CH_mbi_245 3 13 0.00000404585
Malus domestica Chr16 2 CH_mdo_616 2 3 0.00034128
Manihot esculenta Chromosome14 2 CH_mes_421 2 2 0.000366379
Oryza sativa ssp. japonica chr06 2 CH_osa_396 2 4 0.000950537
Punica granatum NC_045133.1 2 CH_pgr_54 4 4 0.0000000000443651
Papaver somniferum NW_020651415.1 2 CH_pso_632 2 2 0.000472989
Quercus lobata 10 2 CH_qlo_67 6 7 4.04514e-19
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_702 2 3 0.000358775
Rhododendron simsii chr12 2 CH_rsi_244 3 6 0.00000249782
Rhododendron simsii ctg64 2 CH_rsi_583 2 2 0.000967961
Solanum pennellii Spenn-ch05 2 CH_spe_366 2 2 0.000133437
Solanum tuberosum ST4.03ch05 2 CH_stu_167 3 3 0.0000000787843
Solanum tuberosum ST4.03ch03 2 CH_stu_607 2 2 0.000768679
Trochodendron aralioides group12 2 CH_tar_481 2 3 0.000540303
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_398 2 3 0.00083625

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001