Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.zaxinone synthase (ZAS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_23 3 3 0.0000000386485
Acer truncatum chr7 1 CH_acertr_192 3 15 0.00000339059
Actinidia chinensis Lachesis_group14 1 CH_ach_89 2 2 0.0000543213
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 1 CH_arhy_508 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_509 2 2 0.00017963
Amborella trichopoda AmTr_v1.0_scaffold00056 1 CH_atr_189 2 2 0.0000794407
Camellia sinensis var. sinensis Chr15 1 CH_camsi_227 4 28 0.0000000295847
Coffea canephora chr8 1 CH_ccan_238 2 11 0.000119248
Daucus carota DCARv2_Chr1 1 CH_dca_235 2 2 0.0000637775
Davidia involucrata GWHABJS00000017 1 CH_din_115 3 4 0.0000000600289
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_175 3 8 0.000000676424
Eucalyptus grandis Chr03 1 CH_egr_221 4 4 0.00000000000300752
Erythranthe guttata scaffold_5 1 CH_egut_366 2 2 0.000218444
Fragaria x ananassa Fvb2-3 1 CH_fan_469 2 2 0.000277554
Fragaria vesca Fvb2 1 CH_fve_347 2 2 0.00017673
Glycine max Gm04 1 CH_gma_447 2 2 0.000227734
Glycine max Gm06 1 CH_gma_448 2 2 0.000227734
Lotus japonicus chr1 1 CH_lja_87 3 3 0.00000000767031
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_479 2 3 0.000462586
Magnolia biondii Chr04 1 CH_mbi_335 2 2 0.0000485661
Manihot esculenta Chromosome03 1 CH_mes_150 3 3 0.0000000223729
Marchantia polymorpha scaffold_12 1 CH_mpo_123 2 2 0.000662654
Petunia axillaris Peaxi162Scf00323 1 CH_pax_234 2 3 0.00021106
Prunus persica Pp01 1 CH_ppe_339 2 2 0.0000745962
Pisum sativum chr5LG3 1 CH_psa_225 2 2 0.0000521635
Populus trichocarpa Chr18 1 CH_ptr_177 3 3 0.000000100229
Populus trichocarpa Chr06 1 CH_ptr_178 3 3 0.000000100229
Phaseolus vulgaris Chr09 1 CH_pvu_288 2 2 0.0000734727
Salix brachista GWHAAZH00000018 1 CH_sbr_27 5 7 0.0000000000000149008
Solanum tuberosum ST4.03ch08 1 CH_stu_385 2 2 0.0000512453
Theobroma cacao Chromosome_9 1 CH_tca_131 3 4 0.0000000321834
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_235 2 2 0.0000756974
Tripterygium wilfordii NC_052235.1 1 CH_twi_32 4 5 0.00000000000259936
Vigna mungo CM024072.1 1 CH_vmu_263 2 3 0.000193836
Vitis vinifera chr4 1 CH_vvi_412 2 3 0.000684523
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_23 3 3 0.0000000386485
Acer truncatum chr7 2 CH_acertr_192 3 15 0.00000339059
Actinidia chinensis Lachesis_group14 2 CH_ach_89 2 2 0.0000543213
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 2 CH_arhy_508 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_509 2 2 0.00017963
Amborella trichopoda AmTr_v1.0_scaffold00056 2 CH_atr_189 2 2 0.0000794407
Camellia sinensis var. sinensis Chr15 2 CH_camsi_227 4 28 0.0000000295847
Coffea canephora chr8 2 CH_ccan_238 2 11 0.000119248
Daucus carota DCARv2_Chr1 2 CH_dca_235 2 2 0.0000637775
Davidia involucrata GWHABJS00000017 2 CH_din_115 3 4 0.0000000600289
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_175 3 8 0.000000676424
Eucalyptus grandis Chr03 2 CH_egr_221 4 4 0.00000000000300752
Erythranthe guttata scaffold_5 2 CH_egut_366 2 2 0.000218444
Fragaria x ananassa Fvb2-3 2 CH_fan_469 2 2 0.000277554
Fragaria vesca Fvb2 2 CH_fve_347 2 2 0.00017673
Gossypium hirsutum D05 2 CH_ghi_626 2 2 0.000267016
Glycine max Gm04 2 CH_gma_447 2 2 0.000227734
Glycine max Gm06 2 CH_gma_448 2 2 0.000227734
Lotus japonicus chr1 2 CH_lja_87 3 3 0.00000000767031
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_479 2 3 0.000462586
Magnolia biondii Chr04 2 CH_mbi_335 2 2 0.0000485661
Manihot esculenta Chromosome03 2 CH_mes_150 3 3 0.0000000223729
Marchantia polymorpha scaffold_12 2 CH_mpo_123 2 2 0.000662654
Petunia axillaris Peaxi162Scf00323 2 CH_pax_234 2 3 0.00021106
Prunus persica Pp01 2 CH_ppe_339 2 2 0.0000745962
Pisum sativum chr5LG3 2 CH_psa_225 2 2 0.0000521635
Populus trichocarpa Chr18 2 CH_ptr_177 3 3 0.000000100229
Populus trichocarpa Chr06 2 CH_ptr_178 3 3 0.000000100229
Phaseolus vulgaris Chr09 2 CH_pvu_288 2 2 0.0000734727
Salix brachista GWHAAZH00000018 2 CH_sbr_27 5 7 0.0000000000000149008
Solanum tuberosum ST4.03ch08 2 CH_stu_385 2 2 0.0000512453
Theobroma cacao Chromosome_9 2 CH_tca_131 3 4 0.0000000321834
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_235 2 2 0.0000756974
Tripterygium wilfordii NC_052235.1 2 CH_twi_32 4 5 0.00000000000259936
Vigna mungo CM024072.1 2 CH_vmu_263 2 3 0.000193836
Vitis vinifera chr4 2 CH_vvi_412 2 3 0.000684523

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001