Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.phenolics.flavonoid biosynthesis.aurones.aureusidin synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_362 1 CH_aag_118 3 3 0.000156671
Anthoceros agrestis Sc2ySwM_117 1 CH_aag_2 16 44 1.43332e-29
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 1 CH_amhyb_33 3 3 0.0000000425145
Aquilegia oxysepala CHR01 1 CH_aox_136 3 10 0.0000647494
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_584 2 2 0.000299383
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 1 CH_arhy_772 2 3 0.000898109
Beta vulgaris Chr8_EL10_PGA_scaffold4 1 CH_bvu_16 6 15 4.38066e-16
Cannabis sativa NC_044371.1 1 CH_cansat_163 3 8 0.00000362053
Capsicum annuum PGAv.1.6.scaffold195 1 CH_can_70 5 17 0.000000000120863
Corylus avellana 2 1 CH_cav_49 5 43 0.000000000249164
Chara braunii BFEA01000405 1 CH_cbr_127 3 10 0.000520096
Chara braunii BFEA01000592 1 CH_cbr_53 3 5 0.0000434252
Carpinus fangiana Cfa01 1 CH_cfa_190 3 28 0.0000281598
Carya illinoinensis Chr09 1 CH_cil_402 2 3 0.000185943
Citrullus lanatus CG_Chr03 1 CH_cla_1 9 11 2.99381e-28
Cucumis melo chr12 1 CH_cme_76 3 4 0.0000000267023
Carica papaya supercontig_27 1 CH_cpa_390 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_3787 1 CH_cqu_496 2 2 0.000473821
Chenopodium quinoa C_Quinoa_Scaffold_2947 1 CH_cqu_497 2 2 0.000473821
Cucumis sativus L. chr1 1 CH_csa_58 4 8 0.000000000122148
Daucus carota DCARv2_Chr5 1 CH_dca_475 2 2 0.000956663
Durio zibethinus NW_019168015.1 1 CH_dzi_331 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_113 4 10 0.0000000187685
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_64 4 4 0.0000000000894535
Erythranthe guttata scaffold_8 1 CH_egut_206 3 3 0.00000131229
Erythranthe guttata scaffold_13 1 CH_egut_25 7 12 3.06679e-18
Fragaria x ananassa Fvb3-3 1 CH_fan_179 3 5 0.00000058749
Fragaria x ananassa Fvb3-1 1 CH_fan_202 3 5 0.00000146861
Fragaria vesca Fvb3 1 CH_fve_140 3 3 0.000000104115
Glycine max Gm07 1 CH_gma_27 6 6 2.19397e-17
Glycine max Gm13 1 CH_gma_339 3 7 0.0000513868
Helianthus annuus HanXRQChr11 1 CH_han_200 4 9 0.00000001079
Hydrangea macrophylla Hma1.2p1_0191F.1 1 CH_hma_42 4 12 0.000000030505
Lupinus albus Lalb_Chr20 1 CH_lal_270 2 2 0.000157447
Lonicera japonica GWHAAZE00000001 1 CH_lonja_119 4 5 0.000000000405922
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_283 3 4 0.0000107766
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_307 3 5 0.0000269335
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_59 6 14 0.000000000000299462
Magnolia biondii Chr18 1 CH_mbi_234 4 14 0.00000250713
Magnolia biondii Chr05 1 CH_mbi_9 9 15 1.09095e-22
Malus domestica Chr05 1 CH_mdo_21 7 18 1.27753e-17
Malus domestica Chr10 1 CH_mdo_35 6 12 0.00000000000000279587
Marchantia polymorpha scaffold_145 1 CH_mpo_21 5 7 0.0000000101864
Marchantia polymorpha scaffold_38 1 CH_mpo_35 4 4 0.000000266956
Marchantia polymorpha scaffold_121 1 CH_mpo_36 4 4 0.000000266956
Marchantia polymorpha scaffold_21 1 CH_mpo_59 4 8 0.0000185741
Olea europaea scaffold1344 1 CH_oeu_116 3 4 0.00000777673
Olea europaea chr21 1 CH_oeu_5 7 7 1.17271e-20
Oryza sativa ssp. japonica chr04 1 CH_osa_402 2 3 0.000950562
Oryza sativa ssp. japonica chr01 1 CH_osa_403 2 3 0.000950562
Petunia axillaris Peaxi162Scf00445 1 CH_pax_123 3 7 0.00000103926
Prunus persica Pp04 1 CH_ppe_54 5 6 0.00000000000000139367
Populus trichocarpa Chr01 1 CH_ptr_30 7 10 1.16289e-19
Quercus lobata 10 1 CH_qlo_942 2 3 0.00046464
Striga asiatica scaffold130 1 CH_sas_155 2 2 0.000938057
Salvia bowleyana GWHASIU00000004 1 CH_sbo_109 6 60 0.00000000402174
Salvia bowleyana GWHASIU00000004 1 CH_sbo_206 5 66 0.00000242114
Salvia bowleyana GWHASIU00000005 1 CH_sbo_408 3 11 0.000417149
Salvia bowleyana GWHASIU00000004 1 CH_sbo_461 3 13 0.000722655
Salix brachista GWHAAZH00000016 1 CH_sbr_386 2 2 0.00063014
Sechium edule LG08 1 CH_sed_260 2 2 0.000214026
Sequoiadendron giganteum chr8 1 CH_sgi_628 3 3 0.00000242069
Sequoiadendron giganteum chr5 1 CH_sgi_629 3 3 0.00000242069
Sequoiadendron giganteum chr6 1 CH_sgi_81 8 11 8.22552e-22
Solanum lycopersicum SL4.0ch08 1 CH_sly_15 8 11 1.12303e-24
Selaginella moellendorffii scaffold_112 1 CH_smo_58 3 4 0.0000115042
Solanum pennellii Spenn-ch08 1 CH_spe_8 7 11 1.61012e-21
Solanum tuberosum ST4.03ch08 1 CH_stu_8 9 16 7.71511e-27
Theobroma cacao Chromosome_6 1 CH_tca_45 5 8 0.000000000000253745
Tripterygium wilfordii NC_052253.1 1 CH_twi_177 2 2 0.0000557507
Utricularia gibba unitig_27 1 CH_ugi_196 2 3 0.000220369
Vigna mungo CM024069.1 1 CH_vmu_345 2 2 0.000387685
Vanilla planifolia CM028157.1 1 CH_vpl_101 3 12 0.00000720253
Anthoceros agrestis Sc2ySwM_362 2 CH_aag_118 3 3 0.000156671
Anthoceros agrestis Sc2ySwM_117 2 CH_aag_2 16 44 1.43332e-29
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 2 CH_amhyb_33 3 3 0.0000000425145
Aquilegia oxysepala CHR01 2 CH_aox_136 3 10 0.0000647494
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_584 2 2 0.000299383
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 2 CH_arhy_772 2 3 0.000898109
Beta vulgaris Chr8_EL10_PGA_scaffold4 2 CH_bvu_16 6 15 4.38066e-16
Cannabis sativa NC_044371.1 2 CH_cansat_163 3 8 0.00000362053
Capsicum annuum PGAv.1.6.scaffold195 2 CH_can_70 5 17 0.000000000120863
Corylus avellana 2 2 CH_cav_49 5 43 0.000000000249164
Chara braunii BFEA01000405 2 CH_cbr_127 3 10 0.000520096
Chara braunii BFEA01000592 2 CH_cbr_53 3 5 0.0000434252
Carpinus fangiana Cfa01 2 CH_cfa_190 3 28 0.0000281598
Carya illinoinensis Chr09 2 CH_cil_402 2 3 0.000185943
Citrullus lanatus CG_Chr03 2 CH_cla_1 9 11 2.99381e-28
Cucumis melo chr12 2 CH_cme_76 3 4 0.0000000267023
Carica papaya supercontig_27 2 CH_cpa_390 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_3787 2 CH_cqu_496 2 2 0.000473821
Chenopodium quinoa C_Quinoa_Scaffold_2947 2 CH_cqu_497 2 2 0.000473821
Cucumis sativus L. chr1 2 CH_csa_58 4 8 0.000000000122148
Daucus carota DCARv2_Chr5 2 CH_dca_475 2 2 0.000956663
Durio zibethinus NW_019168015.1 2 CH_dzi_331 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_113 4 10 0.0000000187685
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_64 4 4 0.0000000000894535
Erythranthe guttata scaffold_8 2 CH_egut_206 3 3 0.00000131229
Erythranthe guttata scaffold_13 2 CH_egut_25 7 12 3.06679e-18
Fragaria x ananassa Fvb3-3 2 CH_fan_179 3 5 0.00000058749
Fragaria x ananassa Fvb3-1 2 CH_fan_202 3 5 0.00000146861
Fragaria vesca Fvb3 2 CH_fve_140 3 3 0.000000104115
Glycine max Gm07 2 CH_gma_27 6 6 2.19397e-17
Glycine max Gm13 2 CH_gma_339 3 7 0.0000513868
Helianthus annuus HanXRQChr11 2 CH_han_200 4 9 0.00000001079
Hydrangea macrophylla Hma1.2p1_0191F.1 2 CH_hma_42 4 12 0.000000030505
Lupinus albus Lalb_Chr20 2 CH_lal_270 2 2 0.000157447
Lotus japonicus chr6 2 CH_lja_324 2 2 0.000214523
Lonicera japonica GWHAAZE00000001 2 CH_lonja_119 4 5 0.000000000405922
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_283 3 4 0.0000107766
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_307 3 5 0.0000269335
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_59 6 14 0.000000000000299462
Magnolia biondii Chr18 2 CH_mbi_234 4 14 0.00000250713
Magnolia biondii Chr05 2 CH_mbi_9 9 15 1.09095e-22
Malus domestica Chr05 2 CH_mdo_21 7 18 1.27753e-17
Malus domestica Chr10 2 CH_mdo_35 6 12 0.00000000000000279587
Marchantia polymorpha scaffold_145 2 CH_mpo_21 5 7 0.0000000101864
Marchantia polymorpha scaffold_38 2 CH_mpo_35 4 4 0.000000266956
Marchantia polymorpha scaffold_121 2 CH_mpo_36 4 4 0.000000266956
Marchantia polymorpha scaffold_21 2 CH_mpo_59 4 8 0.0000185741
Olea europaea scaffold1344 2 CH_oeu_116 3 4 0.00000777673
Olea europaea chr21 2 CH_oeu_5 7 7 1.17271e-20
Oryza sativa ssp. japonica chr04 2 CH_osa_402 2 3 0.000950562
Oryza sativa ssp. japonica chr01 2 CH_osa_403 2 3 0.000950562
Petunia axillaris Peaxi162Scf00445 2 CH_pax_123 3 7 0.00000103926
Prunus persica Pp04 2 CH_ppe_54 5 6 0.00000000000000139367
Populus trichocarpa Chr01 2 CH_ptr_30 7 10 1.16289e-19
Quercus lobata 10 2 CH_qlo_942 2 3 0.00046464
Striga asiatica scaffold130 2 CH_sas_155 2 2 0.000938057
Salvia bowleyana GWHASIU00000004 2 CH_sbo_109 6 60 0.00000000402174
Salvia bowleyana GWHASIU00000004 2 CH_sbo_206 5 66 0.00000242114
Salvia bowleyana GWHASIU00000005 2 CH_sbo_408 3 11 0.000417149
Salvia bowleyana GWHASIU00000004 2 CH_sbo_461 3 13 0.000722655
Salix brachista GWHAAZH00000016 2 CH_sbr_386 2 2 0.00063014
Sechium edule LG08 2 CH_sed_260 2 2 0.000214026
Sequoiadendron giganteum chr8 2 CH_sgi_628 3 3 0.00000242069
Sequoiadendron giganteum chr5 2 CH_sgi_629 3 3 0.00000242069
Sequoiadendron giganteum chr6 2 CH_sgi_81 8 11 8.22552e-22
Solanum lycopersicum SL4.0ch08 2 CH_sly_15 8 11 1.12303e-24
Selaginella moellendorffii scaffold_112 2 CH_smo_58 3 4 0.0000115042
Solanum pennellii Spenn-ch08 2 CH_spe_8 7 11 1.61012e-21
Solanum tuberosum ST4.03ch08 2 CH_stu_8 9 16 7.71511e-27
Theobroma cacao Chromosome_6 2 CH_tca_45 5 8 0.000000000000253745
Tripterygium wilfordii NC_052253.1 2 CH_twi_177 2 2 0.0000557507
Utricularia gibba unitig_27 2 CH_ugi_196 2 3 0.000220369
Vigna mungo CM024069.1 2 CH_vmu_345 2 2 0.000387685
Vanilla planifolia CM028157.1 2 CH_vpl_101 3 12 0.00000720253

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001