Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.methylerythritol phosphate (MEP) pathway.1-deoxy-D-xylulose 5-phosphate synthase (DXS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cicer arietinum L. Ca_LG4_v3 1 CH_car_50 3 3 0.000000181733
Ceratophyllum demersum 1 1 CH_cde_286 2 2 0.000789796
Ceratophyllum demersum 3 1 CH_cde_287 2 2 0.000789796
Citrullus lanatus CG_Chr10 1 CH_cla_227 2 2 0.000887115
Cucumis melo chr06 1 CH_cme_311 2 3 0.000667111
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_129 3 3 0.0000000604069
Gossypium hirsutum A08 1 CH_ghi_379 3 6 0.00000470422
Gossypium hirsutum D08 1 CH_ghi_401 3 7 0.00000823154
Gossypium raimondii Chr04 1 CH_gra_185 3 6 0.00000172406
Helianthus annuus HanXRQChr16 1 CH_han_650 2 2 0.000386429
Magnolia biondii Chr16 1 CH_mbi_172 3 3 0.000000198133
Pisum sativum chr1LG6 1 CH_psa_412 2 2 0.000782452
Quercus lobata CM012294 1 CH_qlo_1021 2 2 0.000774433
Rhododendron simsii chr04 1 CH_rsi_456 2 2 0.000193592
Simmondsia chinensis GWHAASQ00000013 1 CH_sci_68 3 3 0.000000217487
Sequoiadendron giganteum chr1 1 CH_sgi_567 3 4 0.000000498328
Theobroma cacao Chromosome_1 1 CH_tca_448 2 2 0.000732386
Cicer arietinum L. Ca_LG4_v3 2 CH_car_50 3 3 0.000000181733
Ceratophyllum demersum 1 2 CH_cde_286 2 2 0.000789796
Ceratophyllum demersum 3 2 CH_cde_287 2 2 0.000789796
Citrullus lanatus CG_Chr10 2 CH_cla_227 2 2 0.000887115
Cucumis melo chr06 2 CH_cme_311 2 3 0.000667111
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_129 3 3 0.0000000604069
Gossypium hirsutum A08 2 CH_ghi_379 3 6 0.00000470422
Gossypium hirsutum D08 2 CH_ghi_401 3 7 0.00000823154
Gossypium raimondii Chr04 2 CH_gra_185 3 6 0.00000172406
Helianthus annuus HanXRQChr16 2 CH_han_650 2 2 0.000386429
Magnolia biondii Chr16 2 CH_mbi_172 3 3 0.000000198133
Pisum sativum chr1LG6 2 CH_psa_412 2 2 0.000782452
Quercus lobata CM012294 2 CH_qlo_1021 2 2 0.000774433
Rhododendron simsii chr04 2 CH_rsi_456 2 2 0.000193592
Simmondsia chinensis GWHAASQ00000013 2 CH_sci_68 3 3 0.000000217487
Sequoiadendron giganteum chr1 2 CH_sgi_567 3 4 0.000000498328
Theobroma cacao Chromosome_1 2 CH_tca_448 2 2 0.000732386

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001