Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 1 CH_aar_57 3 3 0.0000000124856
Arabidopsis lyrata scaffold_7 1 CH_aly_328 2 2 0.000198013
Arabidopsis thaliana Chr4 1 CH_ath_232 2 2 0.0000286492
Brassica carinata Contig324 1 CH_bca_872 2 2 0.000320646
Brassica oleracea C3 1 CH_bol_360 2 2 0.000326861
Brassica rapa A01 1 CH_bra_329 2 2 0.000429314
Brassica rapa A03 1 CH_bra_330 2 2 0.000429314
Beta vulgaris Chr9_EL10_PGA_scaffold8 1 CH_bvu_197 2 2 0.0000827917
Camellia sinensis var. sinensis Chr3 1 CH_camsi_714 2 4 0.000275116
Cardamine hirsuta Chr3 1 CH_chi_316 2 2 0.000207361
Carica papaya supercontig_150 1 CH_cpa_37 3 3 0.000000013557
Chenopodium quinoa C_Quinoa_Scaffold_3670 1 CH_cqu_381 2 2 0.000142146
Capsella rubella scaffold_7 1 CH_cru_283 2 2 0.0000731154
Daucus carota DCARv2_Chr6 1 CH_dca_378 2 2 0.000382665
Eutrema salsugineum scaffold_1 1 CH_esa_193 2 2 0.0000761499
Magnolia biondii Chr16 1 CH_mbi_473 2 2 0.000145698
Punica granatum NC_045128.1 1 CH_pgr_39 5 17 0.0000000000014709
Salix brachista GWHAAZH00000009 1 CH_sbr_94 3 3 0.0000000238253
Schrenkiella parvula ch7-5 1 CH_spa_182 2 2 0.000078734
Solanum pennellii Spenn-ch10 1 CH_spe_537 2 3 0.000800581
Selenicereus undatus Scaffold_33676 1 CH_sun_265 2 3 0.000653935
Aethionema arabicum LG-2 2 CH_aar_57 3 3 0.0000000124856
Arabidopsis lyrata scaffold_7 2 CH_aly_328 2 2 0.000198013
Arabidopsis thaliana Chr4 2 CH_ath_232 2 2 0.0000286492
Brassica carinata Contig324 2 CH_bca_872 2 2 0.000320646
Brassica oleracea C3 2 CH_bol_360 2 2 0.000326861
Brassica rapa A01 2 CH_bra_329 2 2 0.000429314
Brassica rapa A03 2 CH_bra_330 2 2 0.000429314
Beta vulgaris Chr9_EL10_PGA_scaffold8 2 CH_bvu_197 2 2 0.0000827917
Camellia sinensis var. sinensis Chr3 2 CH_camsi_714 2 4 0.000275116
Cardamine hirsuta Chr3 2 CH_chi_316 2 2 0.000207361
Carica papaya supercontig_150 2 CH_cpa_37 3 3 0.000000013557
Chenopodium quinoa C_Quinoa_Scaffold_3670 2 CH_cqu_381 2 2 0.000142146
Capsella rubella scaffold_7 2 CH_cru_283 2 2 0.0000731154
Daucus carota DCARv2_Chr6 2 CH_dca_378 2 2 0.000382665
Eutrema salsugineum scaffold_1 2 CH_esa_193 2 2 0.0000761499
Magnolia biondii Chr16 2 CH_mbi_473 2 2 0.000145698
Punica granatum NC_045128.1 2 CH_pgr_39 5 17 0.0000000000014709
Salix brachista GWHAAZH00000009 2 CH_sbr_94 3 3 0.0000000238253
Schrenkiella parvula ch7-5 2 CH_spa_182 2 2 0.000078734
Solanum pennellii Spenn-ch10 2 CH_spe_537 2 3 0.000800581
Selenicereus undatus Scaffold_33676 2 CH_sun_265 2 3 0.000653935

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001